FMO06765.5prime Sequence
800 bp (761 high quality bases) assembled on 2008-10-01
> FMO06765.5prime
TTTATCAGTCGACATGTTCAAGGTGTTCGATAAGCCCTTCGCCGATCCTG
TCCAGCTGCCGCTGGCGGGCAGTATCCGCACCTCGGTGATCATCATCACG
GTGTATCTATTGTTTGTGCTCAAGCTGGGCAGGAAGCTGATGGACAAGCA
TGAGGCACTCCAGCTGCGAGGTGTGCTCAAGTTCTACAACATCGGACAAG
TCCTGTTCAATTCGGTGATTTTTGTGTGGGGCATCCATCTGTTATTCGTG
CAGAAGCCGTACAACCTGAGCTGCATGCAAGTCCTGCCGCAGGATCATGA
GCTAAAGTCCACGGAAAGGACACTGTCGTACATGTACCATCTGAACAAGG
TGCTCGACCTGATGGACACCATATTCTTTGTGCTGCGCAAGAAGCAGCGC
CAGATCACGTTCCTCCATGTGTTCCATCACGTCTTCATGGTCTTCACCTC
GCACATGCTGATCCGATTCTACGGTTTTGGTGGCCATGTCTTCCTGATCT
GCATGTTCAATGTTCTGGTGCACATCGTCATGTACGGCTACTACTACGCC
TCGTCACAGAGCCAGAATGTGCAAGAGAGCCTCTGGTGGAAGAAGTACCT
TACCCTGGGCCAGCTGGTGCAGTTCCTCCTGATGTTCCTGCACTGCATGT
ACACCTATTTCCAGCCAAACTGCTCGGCGTCGCGGGGTGTCATCTATGTC
ATAAGTTCGGCCAGCGCCTTCATGTTTCTGATGTTCACCAGTTCTACATA
AAGACCTACATTCAGCCAAAAGAGGTCAAGTCTAAGGGCAAGGTCAACAC
FMO06765.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16904-RA | 980 | CG16904-RA | 23..808 | 14..798 | 3815 | 99.1 | Plus |
| CG5326-RA | 1694 | CG5326-RA | 707..778 | 359..430 | 210 | 86.1 | Plus |
| CG17821-RA | 1073 | CG17821-RA | 616..713 | 344..441 | 190 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9816100..9816670 | 798..229 | 2730 | 98.9 | Minus |
| 3R | 32079331 | 3R | 9816741..9816957 | 230..14 | 1070 | 99.5 | Minus |
| 3R | 32079331 | 3R | 22533152..22533223 | 430..359 | 210 | 86.1 | Minus |
| 3R | 32079331 | 3R | 22559793..22559868 | 430..355 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:48 has no hits.
FMO06765.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:24 Download gff for
FMO06765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16904-RA | 23..808 | 14..800 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:36:04 Download gff for
FMO06765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16904-RA | 31..816 | 14..800 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:23 Download gff for
FMO06765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16904-RA | 23..808 | 14..800 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:23 Download gff for
FMO06765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9816742..9816957 | 14..229 | 99 | | Minus |
| 3R | 9816098..9816669 | 230..800 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:24 Download gff for
FMO06765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5641820..5642391 | 230..800 | 98 | <- | Minus |
| arm_3R | 5642464..5642679 | 14..229 | 99 | | Minus |
