FMO06773.5prime Sequence
583 bp (583 high quality bases) assembled on 2008-10-01
> FMO06773.5prime
CTTATCAGTCGACATGTCGGCAGCAGCAGGCTTGATTCCGCCTCCAGTTT
CCTGGGCCCAGCGCAATGACTTGATCTACGTCATCATCGATGTCGAATGC
AAGGACATCGAACACAAAGTTACGGAAAAAACCTTCACCTTCAAGGGCGT
AAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCCTCC
ACGAGGTGGATCCCGAGAAGGTGACCAGCAAGAACATTGGCCGCTGCCTG
GAATTCACAATACCCAAGAAGGCGGCCGGTCCCTACTGGTCCTCGCTGAC
CACGGACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTTGCCAAGTGGC
GCGATGAGTCCGACGACGAGGAGGGTGACCAAAAAGACAACAGCATGTTT
GGAAATTTCCTTAACAGCCCTGGTGGCGATTGGAACAACAAGTTCGACGA
TTTCAACGTCGATGACGAGGAGGAGGACTCGGATGACAACATCCCAAGTC
TGTCCCAGAACGACGAGGATGACGAGGAGGGCGGCGAGGGTGATAAGGAG
AAGAAGCCAGCTGCCGCAAGCTTTCTAGACCAT
FMO06773.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16817-RB | 809 | CG16817-RB | 144..695 | 14..565 | 2760 | 100 | Plus |
| CG16817-RA | 1120 | CG16817-RA | 144..695 | 14..565 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9678716..9678978 | 114..376 | 1300 | 99.6 | Plus |
| 3R | 32079331 | 3R | 9679042..9679233 | 374..565 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 9678561..9678648 | 30..117 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:26 has no hits.
FMO06773.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:38 Download gff for
FMO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16817-RA | 140..695 | 6..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:25 Download gff for
FMO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16817-RA | 136..691 | 6..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:41 Download gff for
FMO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16817-RA | 140..695 | 6..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:41 Download gff for
FMO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9678562..9678648 | 31..117 | 100 | -> | Plus |
| 3R | 9678720..9678976 | 118..374 | 100 | -> | Plus |
| 3R | 9679043..9679233 | 375..565 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:38 Download gff for
FMO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5504284..5504370 | 31..117 | 100 | -> | Plus |
| arm_3R | 5504442..5504698 | 118..374 | 100 | -> | Plus |
| arm_3R | 5504765..5504955 | 375..565 | 100 | | Plus |
