FMO06774.5prime Sequence
1169 bp (891 high quality bases) assembled on 2008-10-01
> FMO06774.5prime
CAGTCGACATGGGCGGATTCCTGGATAAGCCGAAAACCGCCAAGCACAAT
GACGAGGGTGAGGGCAACAAGCTGCTCTTCGGGGTCAGCTCGATGCAGGG
ATGGCGGTCGGAGATGGAGGACGCCTACTACGCTCGTGCCGGGCTGGGGG
ATGCCCTGCCGGACTGGAGCTTCTTTGCCGTGTTCGACGGGCATGCCGGA
TGCAAGGTGTCGGAGCACTGTGCCAAGCACCTTCTGGAGAGCATTATTAG
CACCGAGGAATTCATTGGAGGCGACCACGTGAAGGGCATTCGCACCGGCT
TCCTGCGCATCGACGAGGTTATGCGGGAACTGCCGGAATTCACCCGGGAG
TCGGAGAAATGCGGCGGAACTACCGCCGTGTGCGCCTTTGTCGGCCTCAC
GCAAGTGTACATCGCCAATTGTGGTGATTCGAGGGCCGTCTTGTGCCGCC
AGGGTGTTCCGGTGTTCGCCACGCAGGATCACAAACCCATTCTGCCGGAG
GAGAAAGAGCGCATCTATAATGCGGGTGGCAGTGTTATGATAAAGCGCGT
AAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGATTACGACTTTAAGA
ACGTCAAGGAGAAGGGACAGTGCGAGCAGTTGGTATCGCCGGAACCGGAG
ATATTCTGTCAGAGCCCGCCAGGATAGCGATGAGTTCCTGGTGCTCGCTT
GCGATGGATCTGGGATGTGATGTCCCAACGAGGACGTGTGCAGCTTCATC
CACTCGCGAATGCGGGTGACCAGTAAACCTAGTGAGCATCGCCAACCAGG
TCGTGGACACCCTGCCCTGCACAAGGGTAGCCCGCGACAACATGAGCATC
ATCATCATTGCCTTCCCCGGAGCTCCGAAGCCACCGAGGAAGCGTAGAAG
GCTGAACATCGTCTGGAAAACAAATCAAGAGATCACAGAGACGAAATAGA
GTCTAGCAGATAACCGACTACGTGGATTTTGCCTGAAGTTGTCTTGCAGA
ACAAAGACAAATCGAAGTCTTCCACCCGGGAGGAAGGTCTACAGGCCCAA
TTATCACGGTTACCGAGGCGCACATTCAAGCCAAGATTTTCGGATTCGAC
AGGTGAGGGCATGGAATCTCTCATATTTTTATTCATTCCGCAGGCTTTTT
CAGAACTATTCGTTTGGGG
FMO06774.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alph-RE | 1683 | CG1906-RE | 415..1529 | 7..1129 | 4705 | 96.1 | Plus |
| alph-RC | 2341 | CG1906-RC | 180..1256 | 7..1091 | 4670 | 96.7 | Plus |
| alph-RD | 2417 | CG1906-RD | 256..1332 | 7..1091 | 4670 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29593349..29594151 | 7..811 | 3830 | 99.5 | Plus |
| 3R | 32079331 | 3R | 29594232..29594321 | 832..920 | 325 | 93.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:59 has no hits.
FMO06774.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:24 Download gff for
FMO06774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alph-RE | 409..1500 | 1..1100 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:57 Download gff for
FMO06774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alph-RE | 418..1509 | 1..1100 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:25 Download gff for
FMO06774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alph-RE | 409..1500 | 1..1100 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:25 Download gff for
FMO06774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29593343..29594163 | 1..825 | 99 | -> | Plus |
| 3R | 29594227..29594344 | 826..940 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:24 Download gff for
FMO06774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25419065..25419885 | 1..825 | 99 | -> | Plus |
| arm_3R | 25419949..25420066 | 826..940 | 92 | -> | Plus |
