FMO06775.5prime Sequence
925 bp (715 high quality bases) assembled on 2008-10-01
> FMO06775.5prime
CAGTCGACATGACGGACCGTAGGGTGTCGTACTTCTACAACGCGGACGTG
GGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAACGCCTGGC
GGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAAAATGAAGA
TCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCTTCCACAGC
GACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAACATTCAGTG
CAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGTAGGCGAGG
ACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGTACACGGGT
GCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGCGACATATG
CATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGAGGCAAGCG
GATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGCTGCTTAAG
TACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCACGGCGACGG
GGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGCTTCGTTCC
ACAAATACGGAATCTACTTTTTTTCCCCGGCACGGGAGACATGTACGAGA
TAGGCGCCGAAATCGGGACGATACTACAGCGTTAATGTGCCGCTAAAGGA
GGGCATTGAATGACCAGAGCTATTTTTCAGGTGTTCAACCCATAATTTTC
TGCCATTTATGGACTTCTACCGGCCCAGGCTTATCGTTTTGCAGTGTGGC
GCGGATTCACTAGCTGGAGATCGACTAGGTTGCTTCTCCCTGAGCACCAG
GGGACTTGGGGAGTGTGTCAATTTGTGAGGAACTGAACGTACCCCATTGG
TGGGTCGGAAGGCGGTGGCTACACC
FMO06775.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hdac3-RA | 1660 | CG2128-RA | 278..1189 | 9..925 | 4185 | 97.9 | Plus |
| CG45100-RA | 1660 | CG45100-RA | 278..1189 | 9..925 | 4185 | 97.9 | Plus |
| Rpd3-RA | 2124 | CG7471-RA | 615..806 | 420..611 | 270 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5473281..5473945 | 925..256 | 2675 | 96 | Minus |
| 3R | 32079331 | 3R | 5474165..5474323 | 167..9 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 5474015..5474103 | 255..167 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 4627863..4628054 | 420..611 | 270 | 76 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:53 has no hits.
FMO06775.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:16 Download gff for
FMO06775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdac3-RA | 274..1189 | 1..925 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:55 Download gff for
FMO06775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdac3-RA | 272..1187 | 1..925 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:02 Download gff for
FMO06775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45100-RA | 274..1189 | 1..925 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:02 Download gff for
FMO06775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5473281..5473945 | 256..925 | 97 | <- | Minus |
| 3R | 5474015..5474103 | 167..255 | 100 | <- | Minus |
| 3R | 5474166..5474327 | 1..166 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:16 Download gff for
FMO06775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1299003..1299667 | 256..925 | 97 | <- | Minus |
| arm_3R | 1299737..1299825 | 167..255 | 100 | <- | Minus |
| arm_3R | 1299888..1300049 | 1..166 | 97 | | Minus |
