FMO06776.5prime Sequence
902 bp (-69 high quality bases) assembled on 2008-10-01
> FMO06776.5prime
ATTAAACAAACTTATCAGTCGACATGCTGAAGCACGTGCAAATCTCGCCG
CTGCGAAATCGATCCGATTCGGTGTCCCTTCGCTCCTCCAGCCACGCCTC
CTCGTGCGCCAGCTCCATGTGCGGCAGTCCGGAGCCTCCGGCGGAGCTGC
AGAGAACACCCTCGAGGGCCTCCAGTTACTCCAGCCTCAACGAGCAGCTG
CCACAGACCACAATCAAGGTGTACACAAACTGCCTGAAGATCGACATCGA
GTACAAGACCCTTGGAATCCAGTGGGACACTACAAGCAAGGAGGTTATTG
GCCAGCTGCTAAGACGCCTCAAGATGCGACATCGCGATCCACGCCTGTTC
TACCTATCCATGGAGGTAGCTGTGCGTCGGGCTGGAGTGAAGACCATCTT
GGTGCTGGACGACGACACCCGGCCGGCCATCATGCAGGCCTGTCATCCGA
AGGGCGAGTCCCGATTCTGTCTGCAGCTAAAACCAGGTGGCCTGATCCGC
GTCCACACCTCCGCGCTGCAGCCCAGCTCTCAGTACAAGTCGCTGGTCAT
CAGCGAGGAGACCACCTGTGACGAGCTGCTGCACCTGCTCCTCGGCTGTT
ACAGTTCACCCGAGCCGGTCGAGAACTTCTCGCTGTACGAGGTGTGTCCC
GGCCCAGGAGTGTCAGCGAAAATTGCACCCCGGACGACCTTCCACTGCGC
ACTCAAATGGAGCGGGATGAAGCGGGGGCGAAAGCTGTCACTTCCTGGTG
CGCCGAACGCCCAATTACCTACGCCGGCGCCAGCTGTTGGCAAACCTAAA
CAAGCATTTGGACAGGGCCGCGGAAGGCGGGAAAAGATGCAACCCGTCTC
CTGGGAGCTCTCCTGGAATCGGATCTGTTCCCTCTCCGAGGATCTGGCAA
AC
FMO06776.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rau-RB | 2268 | CG8965-RB | 565..1431 | 24..896 | 3930 | 97.4 | Plus |
| rau-RA | 2215 | CG8965-RA | 512..1378 | 24..896 | 3930 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5860606..5861180 | 896..316 | 2220 | 96.1 | Minus |
| 2L | 23513712 | 2L | 5861425..5861607 | 206..24 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 5861252..5861367 | 316..201 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:43 has no hits.
FMO06776.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:11 Download gff for
FMO06776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 512..1285 | 24..801 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:22 Download gff for
FMO06776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 495..1268 | 24..801 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:56 Download gff for
FMO06776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rau-RA | 512..1285 | 24..801 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:56 Download gff for
FMO06776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5861252..5861361 | 207..316 | 100 | <- | Minus |
| 2L | 5861425..5861607 | 24..206 | 100 | | Minus |
| 2L | 5860699..5861179 | 317..801 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:11 Download gff for
FMO06776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5860699..5861179 | 317..801 | 98 | <- | Minus |
| arm_2L | 5861252..5861361 | 207..316 | 100 | <- | Minus |
| arm_2L | 5861425..5861607 | 24..206 | 100 | | Minus |
