FMO06777.5prime Sequence
1096 bp (898 high quality bases) assembled on 2008-10-01
> FMO06777.5prime
CTTATCAGTCGACATGGACTACATCTTCGAGTGCTTCTTCGACGACACCT
TCGAGCAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGAGAT
GTCCTCGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCAGAA
CTCGCAGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGAGGT
ACCACCGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGCAAG
TATCACAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGGAGT
CCGGGACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGTGCG
AGAAGACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACATGCT
CCGCACTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGAGAA
TGTCCGGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGCTCA
CATTGCCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGATTC
ATTGATGTCCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCATTG
CCCTACAGGCGAAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACGG
CGCCGCACCGCAGCCGCCAGACGGAGGCGCCTCCGTATTATAGCGCTGCT
CGACAAACTCATCGAGGATGGCCGCAATTACAGCTTCAAACTGGTCATGT
GCCTCAAGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCAGC
CCCCTTTTAATACGCTGCCCGAAGGAAATGTTCTTCGATCGCTATGCCGC
CTTTTAATGGACAGATTATCGGCAAAGAGCAGGTCTACGGAGTGCCCAGT
CTACGTCATTATGCCGCTGCTGTATCGCCGACGTCATGGCGATGCCCATC
AACTGCCAAGCGGCATCGACCCGTTTAAGGTTGGCAAACGCCTGCAACGC
TCATCCATTCTCCGAGAACTTGAAGAACTTGAGCACAGACACGGAAGACA
TGATCAGAAAGGGAAGTCCTCCGCCAATGCAATATGTGAGCGGATA
FMO06777.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stops-RC | 2154 | CG31006-RC | 543..1629 | 13..1086 | 4625 | 96.2 | Plus |
| stops-RA | 1970 | CG31006-RA | 359..1445 | 13..1086 | 4625 | 96.2 | Plus |
| stops-RB | 2109 | CG31006-RB | 498..1584 | 13..1086 | 4625 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31168025..31168246 | 234..13 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 31161175..31161331 | 798..643 | 720 | 98.7 | Minus |
| 3R | 32079331 | 3R | 31166350..31166460 | 442..332 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 31166176..31166282 | 546..440 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 31167326..31167429 | 332..229 | 520 | 100 | Minus |
| 3R | 32079331 | 3R | 31163540..31163638 | 644..544 | 405 | 98 | Minus |
| 3R | 32079331 | 3R | 31160965..31161076 | 910..802 | 380 | 95.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:57:30 has no hits.
FMO06777.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:05 Download gff for
FMO06777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RB | 488..1503 | 4..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:19 Download gff for
FMO06777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RA | 352..1367 | 4..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:56 Download gff for
FMO06777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RB | 491..1506 | 4..1016 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:56 Download gff for
FMO06777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31167326..31167425 | 233..332 | 100 | <- | Minus |
| 3R | 31168027..31168253 | 4..232 | 98 | | Minus |
| 3R | 31160958..31161076 | 800..916 | 95 | <- | Minus |
| 3R | 31161173..31161329 | 645..799 | 98 | <- | Minus |
| 3R | 31163540..31163635 | 547..644 | 97 | <- | Minus |
| 3R | 31166176..31166279 | 443..546 | 100 | <- | Minus |
| 3R | 31166350..31166459 | 333..442 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:05 Download gff for
FMO06777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26993048..26993147 | 233..332 | 100 | <- | Minus |
| arm_3R | 26993749..26993975 | 4..232 | 98 | | Minus |
| arm_3R | 26986680..26986798 | 800..916 | 95 | <- | Minus |
| arm_3R | 26986895..26987051 | 645..799 | 98 | <- | Minus |
| arm_3R | 26989262..26989357 | 547..644 | 97 | <- | Minus |
| arm_3R | 26991898..26992001 | 443..546 | 100 | <- | Minus |
| arm_3R | 26992072..26992181 | 333..442 | 100 | <- | Minus |
