FMO06778.5prime Sequence
1069 bp (936 high quality bases) assembled on 2008-10-01
> FMO06778.5prime
CAGTCGACATGGCGATCGCATTTAATATTGCGATCTATGCAATAATTTTA
GTGGGTAGTTTGGTACCCAGCAAGACTCAGGAATGGGTTCCATATGCATA
TCCTGTAGATGAAAATCAAGGATTGAATGAACAGACACAGTGGCAGTCAC
AATCACAGATTCAGAGTCAAGGGACGTCACAATCACAAAGTCAAGCTCAA
ATTCAATCACAGCCTGAACCAAGGTCATGTTTACAATGTCAACAAGCTAG
TTACCAACAATTCTTTGCGGAGGTGGACATCCAGATCGACGCCAAGCTGG
AGACGCCCAAAATGATCTCAAAATATGGACATCAAGTAGAGACCCATTAC
GCATTCACTGCCGACGGCTACAAGCTCTGCCTGCATCGGATTCCGCGGTC
TGGAGCTACACCCGTCCTATTGGTCCATGGCCTGATGGCCAGCTCGGCCA
CTTGGGTGCAGTTCGGTCCATCCCAGGGTCTGGCCTACATCCTGTCCCAA
AGCGGCTACGACGTCTGGATGTTGAACACAAGGGGTAACGTTTACTCGGA
GGAGCGCCTGGCCGGTCGGGAGAGCGACAAGATCTTCTGGGACTTCTCCT
TCCACGAGATCGGGCAGTACGATCTACCCGCTGCCATCGACTTGATCCTG
CTGCAGACTAAAATGCCGAGCATCCAGTACATTGGTCACTCGCAGGGATC
CACGGCCTTCTTTGTGATGTGTAGTGAAAGGCCTGAGTATGCAGCAAGAT
CTCATTGATGCAGTCCCTCTCGCCATCAGTTTATATGGAAGGAACACGCA
GTCCAGCACTTAAGTTTATGAAATTATTTTCGGGTGGCTTCACAATGTTG
TTGAATCTCTTGGGCGGCCACAGATCTCCCTGAAAAAACAGATTGTTGAC
ATGTTCCGTAACACATCTGCACAAACTATCCCCAGTCGCATCTTGTGCCA
TCTTGGATTGTGGTGTGGCGGATTAACTCAAAGCTTCAATATGACACTAT
CCCCCATTGAGTCACGCCCTCGCAGTAGCTCCGCCTAAACGATCTTATCC
TCGCCAATGTGCAGGCAAT
FMO06778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18284-RB | 1460 | CG18284-RB | 21..1032 | 5..1008 | 4720 | 98.4 | Plus |
| CG18284-RC | 1539 | CG18284-RC | 21..1032 | 5..1008 | 4720 | 98.4 | Plus |
| CG31872-RB | 3401 | CG31872-RB | 2067..2874 | 209..1008 | 3115 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10644557..10645097 | 305..844 | 2655 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10642176..10642716 | 305..844 | 2415 | 96.9 | Plus |
| 2L | 23513712 | 2L | 10643991..10644150 | 5..164 | 785 | 99.4 | Plus |
| 2L | 23513712 | 2L | 10644340..10644485 | 160..305 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 10645160..10645272 | 845..954 | 295 | 92.1 | Plus |
| 2L | 23513712 | 2L | 10641997..10642093 | 209..305 | 245 | 83.5 | Plus |
| 2L | 23513712 | 2L | 10649023..10649179 | 587..743 | 230 | 76.4 | Plus |
| 2L | 23513712 | 2L | 10642793..10642896 | 854..954 | 205 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:14 has no hits.
FMO06778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:48 Download gff for
FMO06778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RC | 18..1032 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:16 Download gff for
FMO06778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RA | 6..1020 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:01 Download gff for
FMO06778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RC | 18..1032 | 1..1008 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:01 Download gff for
FMO06778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10643988..10644150 | 1..164 | 97 | -> | Plus |
| 2L | 10644345..10644485 | 165..305 | 100 | -> | Plus |
| 2L | 10644558..10645097 | 306..844 | 99 | -> | Plus |
| 2L | 10645160..10645315 | 845..993 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:48 Download gff for
FMO06778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10643988..10644150 | 1..164 | 97 | -> | Plus |
| arm_2L | 10644345..10644485 | 165..305 | 100 | -> | Plus |
| arm_2L | 10644558..10645097 | 306..844 | 99 | -> | Plus |
| arm_2L | 10645160..10645315 | 845..993 | 91 | -> | Plus |
