FMO06780.5prime Sequence
842 bp (842 high quality bases) assembled on 2008-10-01
> FMO06780.5prime
CAGTCGACATGAGCTGTCCCTATGCAGGAAACGGAAACGATCACGATGAT
TCGGCGGTGCCATTAACCACGGAAGTGGGCAAAATCTATGGAGAGTATCT
GATGCTGGACAAACTGCTGGATGCCCAGTGTATGCTCTCCGAGGAGGACA
AGCGACCCGTGCACGATGAGCATCTGTTCATCATCACGCACCAGGCCTAC
GAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATACGAGACAT
GTTGGATGCAGAGGTCATCGATGAAACCAAGACGCTGGAGATTGTCAAGC
GACTGAACCGAGTGGTTCTGATTCTAAAACTCCTGGTGGACCAAGTGCCC
ATTCTGGAGACCATGACCCCGCTTGACTTCATGGACTTCCGCAAGTACCT
GGCACCCGCATCTGGTTTCCAGTCGCTGCAGTTCCGTTTGATCGAGAACA
AGCTGGGAGTTCTGACAGAGCAGCGGGTGAGATACAACCAGAAGTACTCG
GATGTCTTTAGCGACGAGGAGGCGCGGAATTCGATTCGCAACTCGGAGAA
AGATCCCCTCGCTACTGGAGCTAGTGCAGCGATGGCTGGAGAGGACGCCC
CGGACTGGAGGAGAGTGGCTTCAACTTCTGGGCCAAAGTTTCAGGAGAGC
GTCGATCGATTCCTGGAGGCGCAGGTACAGAGCGCCATGGAGGAGCCCGT
GGAGAAAGCGAAAAACTACCGCCTCATGGACATTGAGAAGCGACGCGAGG
TGTATCGCTCCATCTTTGATCCGGCAGTGCACGATGCACTGGTGCGACGT
GGGGATCGCCGGTTAGCCATCGTGCCCTCCAGGGAGCATCAT
FMO06780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| v-RA | 1305 | CG2155-RA | 56..889 | 8..842 | 4045 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10924536..10925041 | 330..837 | 2330 | 99 | Plus |
| X | 23542271 | X | 10924126..10924287 | 34..195 | 810 | 100 | Plus |
| X | 23542271 | X | 10924347..10924481 | 195..329 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:49 has no hits.
FMO06780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:31 Download gff for
FMO06780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| v-RA | 48..889 | 1..842 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:10 Download gff for
FMO06780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| v-RA | 30..871 | 1..842 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:27 Download gff for
FMO06780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| v-RA | 48..889 | 1..842 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:27 Download gff for
FMO06780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10924127..10924287 | 35..195 | 100 | -> | Plus |
| X | 10924348..10924481 | 196..329 | 100 | -> | Plus |
| X | 10924536..10925047 | 330..842 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:31 Download gff for
FMO06780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10818160..10818320 | 35..195 | 100 | -> | Plus |
| arm_X | 10818381..10818514 | 196..329 | 100 | -> | Plus |
| arm_X | 10818569..10819080 | 330..842 | 98 | | Plus |
