FMO06781.5prime Sequence
759 bp (749 high quality bases) assembled on 2008-10-01
> FMO06781.5prime
CAGTCGACATGACGCCCCATATGTGCTCAGTGGTGAGGTGTTTGCTTGCG
GCCCTAATCCTTGGCCAAGTGCAAGCCGAGCTGGATTTTAACAACGATCT
CGAAAACAGTCAAAAGTTCAAGAGCATACCAACCACAGTGAAAACCTATG
AGAACGATACAGTGCAGCTTCCGTGCACCTTAAACACTCCCTTCCGCTAC
GTCCGTTGGCATCGGGACGATGTGGCTCTGGTGGACTCCAGACACCCGGA
GCTCCCGCCGCCGGATCGCATAATGCTCTGGCCGAATGGCAGCCTGCAGG
TGGCCAACGTGCAGTCCAGTGACACCGGGGACTACTACTGCGAAATGAAC
TCGGATTCGGGTCATGTGGTCCAGCAGCACGCCATCGAAGTGCAATTGGC
TCCACAGGTGTTGATTGAACCATCGGATCTCACGGAGCAGCGGATAGGTG
CAATCTTCGAGGTGGTGTGCGAGGCCCAGGGAGTGCCCCAACCGGTCATC
ACCTGGCGGTTGAACGGCAATGTCATCCAGCCACAGAGCAACACGGGGAA
TCGGCAAAGCCTCATCCTGGAGATCAAATCGAGGAACCAGGCGGGCCCTC
ATAGAATGCGTGGCCAGCAATTGAGTGGGGTGAGCCAAGCGGTGGCCAAT
GTCTATCTCCATGTGCTATTTTCGCCCGAGGTGAGCATACCCCCAACCCG
TGGTGTACACCAACTGGGCTCCCGTGCCCTCCTTGAGTGCATTGTGGAGG
CGGCACCTG
FMO06781.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wrapper-RA | 1977 | CG10382-RA | 166..911 | 9..757 | 3580 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22380852..22381331 | 187..669 | 2250 | 99.2 | Plus |
| 2R | 25286936 | 2R | 22379802..22379979 | 9..186 | 890 | 100 | Plus |
| 2R | 25286936 | 2R | 22381400..22381487 | 670..757 | 315 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:57 has no hits.
FMO06781.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:39 Download gff for
FMO06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wrapper-RA | 166..912 | 9..759 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:08 Download gff for
FMO06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wrapper-RA | 291..1037 | 9..759 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:48 Download gff for
FMO06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wrapper-RA | 166..912 | 9..759 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:48 Download gff for
FMO06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22380852..22381331 | 187..669 | 99 | -> | Plus |
| 2R | 22381400..22381488 | 670..759 | 94 | | Plus |
| 2R | 22379802..22379979 | 9..186 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:39 Download gff for
FMO06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18267307..18267484 | 9..186 | 100 | -> | Plus |
| arm_2R | 18268357..18268836 | 187..669 | 99 | -> | Plus |
| arm_2R | 18268905..18268993 | 670..759 | 94 | | Plus |
