FMO06782.5prime Sequence
1117 bp (852 high quality bases) assembled on 2008-10-01
> FMO06782.5prime
CAGTCGACATGCTGTGTACCTTGGCACGGAGTTTTGGAACGGCGCTGGCG
AGGAGGAGCTCTTGGTCGACTGCCCGGCGAAGGCGACTGCTGGCCACAAG
TCCCCCCCCTTTGGCGAGCCAGCAGATGCCCAGGAGCTATACGCTAGACA
ACGGACCCAAGGTGAAGTCCGATCATCGCTCTGGAACGATGGTGGAGGTG
GCTCGTGTCATTCGCGAGCAATCCGGCGTGGACGTGGGATACCATACGAT
TCCCAAGCCCCGAGATCATCTCCTGCAGCACGAGCCGAAGAGGGAGGAGC
TTCCACCAAGAACTATGCTGGATTCGCACACCACGGCCATTCTGCCCCTG
AGCTCCAGTGAGCTAATCCGCGAGAGCTACGTGAATCACCTGGGAAGGGT
GAGATTGGGCCGAATTATGGAGGAGTTGGACATGTTTGCCGTATGGATCT
GCCATCGTCATGTGAAGCTGCCCAAGCTGCCGAAGGGAGTGCCTTTGCCT
TACACCTTTTGTCACGTTGCTGGTCGACAAAGTGGAGTTCACCAACCTGG
AGCGGTTGCAGGTCAACCAGGACATCGAGATCAGTGGTCACATCTCGTGG
GCGGGGCGGAGCTCCATGGAGATTACCATCTATGTGAGGCAGTTGGCCAC
GGTGAATATATTGATGTAACAAAAGCAATCTTCGTCATGGTGGCCAGAAA
TGCCACCAATACGGGACCGGCTCCCATTAATCCTATAGAGGTTGGCGATG
AAACCGAAGAAGCTCATTTGGGAGCAAGCAGAGAAAGCGGGAAAAAGTGC
GCAAAGTCTTCTGCCATGGACTCAGTGTTCACTCGCCGCCCAAGGGAGCA
CGACAGGCCCTCATGTTACGAGGTCCTCAAGAGACCACCTCCAGCCAATA
GTATGGATCTCACAAGTGTGTGCTGCGCCGAATTGCGCTGATGGAGGACT
CTAGCATCTACAATGATTGCTTCATTTCCCGGAGAACAGGAATGCCAAAC
CACATCTTTGGGGCTATCTTCTGGCCCAAGGCCGTTGATATTCACTTCTA
TGGTAAGCTTTCTATCGGGGCAATCGGCCACCTCAGGGTCATCTCGGACA
TTAGTTTCAAGCCACCC
FMO06782.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-RB | 1731 | CG1774-RB | 189..1296 | 9..1109 | 4540 | 95.4 | Plus |
| CG1774-RA | 1860 | CG1774-RA | 318..1425 | 9..1109 | 4540 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31593366..31594165 | 198..995 | 3055 | 96.5 | Plus |
| 3R | 32079331 | 3R | 31593120..31593309 | 9..198 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:39 has no hits.
FMO06782.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:13 Download gff for
FMO06782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1365 | 9..995 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:30 Download gff for
FMO06782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1365 | 9..995 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:40 Download gff for
FMO06782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 318..1306 | 9..995 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:40 Download gff for
FMO06782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31593120..31593309 | 9..198 | 100 | -> | Plus |
| 3R | 31593367..31594165 | 199..995 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:13 Download gff for
FMO06782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27418842..27419031 | 9..198 | 100 | -> | Plus |
| arm_3R | 27419089..27419887 | 199..995 | 96 | == | Plus |
