FMO06783.5prime Sequence
1137 bp (985 high quality bases) assembled on 2008-10-01
> FMO06783.5prime
CGTTATCAGTCGACATGGAGAAGCTGCTGCAATCGACGCTGTTTGTCATC
CTGATAATGGCCACAAAATGCGGCAGTGGCTCGACCCAGAACCAGCATCA
CGAGAGCAGTTCCCAGCTGGATCCCGATCCGGAGTTCATAGGGTTCATCA
ACAACGTCACATATCCGGCAGGACGCGAGGCCATCCTGGCCTGCTCGGTG
CGCAATCTCGGCAAGAATAAGGTTGGTTGGCTGAGAGCCTCCGATCAGAC
CGTTTTAGCTCTCCAAGGTCGCGTTGTCACCCATAATGCGAGAATCAGCG
TCATGCATCAGGATATGCACACATGGAAACTAAAAATCAGCAAACTGCGG
GAAAGTGACCGCGGCTGCTATATGTGCCAAATAAATACGAGTCCCATGAA
GAAACAAGTGGGTTGTATCGATGTGCAGGTACCACCGGATATCATCAACG
AAGAGTCATCCGCCGATCTGGCCGTCCAGGAGGGCGAGGATGCCACGCTC
ACCTGCAAAGCCACGGGAAATCCCCAGCCAAGGGTCACTTGGCGCAGGGA
GGACGGCGAAATGATACTCATTCGCAAGCCAGGCAGTAGGGAGCTCATGA
AAGTGGAGTCCTATAATGGATCCTCGCTCAGGCTGCTCCGCCTGGAGAGG
CGTCAGATGGGCGCCTACTTGTGTATAGCATCCAACGATGTTCCACCTGC
CGTCAGCAAACGAGTCTCGCTGAGTGTGCAATTTGCTCCCATGGTGAGGG
CCCCCAGCCAGCTCCTGGGCACGCCCTTGGGATCCGATGTGCAGCTGGAA
TGCAAGGTGGAGGCCTCGCCGTCGCCCGTCTCCTACTGGCTTGAAGGGGG
CGCGGACGTCCAACGGATTTCCCAGCGTCTCCACGCCAGCCTGAATCCGG
CTCGCCGGTCCCGAAATGCTGCTCGACGGGCCCAAGTACGGAATACGGAG
CGCCGCGATTGCTTATCGGGGCGTCATGCTGCTGGTGTGCGTTCCTCTCC
CCCTTCGATGTGGGCACTATCCTGCGTTCAGCACAAACTCGCTTGGGCGG
TGCCGAGGGCACATTGCGTTATCCAAATCAGCCTTCTACTCCGGGCCGCC
TCTCGCCAGCACGATGATCTTCTGAATTAATTCGGAA
FMO06783.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14521-RA | 3105 | CG14521-RA | 1381..2505 | 15..1136 | 4965 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28926898..28927072 | 603..429 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 28926166..28926365 | 930..733 | 745 | 96 | Minus |
| 3R | 32079331 | 3R | 28926717..28926847 | 732..602 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 28927475..28927596 | 223..102 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 28927135..28927241 | 429..323 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 28927310..28927412 | 322..220 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 28927684..28927771 | 102..15 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 28925921..28926062 | 1068..929 | 255 | 88.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:07:00 has no hits.
FMO06783.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:44 Download gff for
FMO06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14521-RA | 1374..2458 | 7..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:28 Download gff for
FMO06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14521-RA | 1356..2440 | 7..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:28 Download gff for
FMO06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14521-RA | 1374..2458 | 7..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:28 Download gff for
FMO06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28926167..28926365 | 733..929 | 96 | <- | Minus |
| 3R | 28926717..28926845 | 604..732 | 100 | <- | Minus |
| 3R | 28926898..28927071 | 430..603 | 100 | <- | Minus |
| 3R | 28927135..28927241 | 323..429 | 100 | <- | Minus |
| 3R | 28927310..28927410 | 222..322 | 100 | <- | Minus |
| 3R | 28927477..28927595 | 103..221 | 100 | <- | Minus |
| 3R | 28927684..28927778 | 7..102 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:44 Download gff for
FMO06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24751889..24752087 | 733..929 | 96 | <- | Minus |
| arm_3R | 24752439..24752567 | 604..732 | 100 | <- | Minus |
| arm_3R | 24752620..24752793 | 430..603 | 100 | <- | Minus |
| arm_3R | 24752857..24752963 | 323..429 | 100 | <- | Minus |
| arm_3R | 24753032..24753132 | 222..322 | 100 | <- | Minus |
| arm_3R | 24753199..24753317 | 103..221 | 100 | <- | Minus |
| arm_3R | 24753406..24753500 | 7..102 | 95 | | Minus |
