FMO06786.5prime Sequence
1140 bp (925 high quality bases) assembled on 2008-10-01
> FMO06786.5prime
CAGTCGACATGGACCATCGTGCCGAGCAGGAAACCCAAGAGATCAATGCC
TTCAAACACTCGCTGCTGAAATATGTGGGTGGTCAGGTTTCGCTGGAAAT
GGAGGTTCCCAAATTGCTGTGGCTGAAGAGGAATCTGTCACAGACTTTTG
GAAATATTTGGAGGGTCTTTGACCTGCCCGACTTTCTGACCTGGCGAGCC
ACTGGAGTGGACACCCGATCACTTTGCTCGGTGGTGTGCAAGTGGAACTA
CGATGCAGCGAATGGCAGTTGGAACAAGGAGTTCCTGAAGCAGGCGGACT
TGGAGGAGTTGACACAGAATAACTTCGAGAAATTGGGCAGTGATGTCCAG
CCGCCTGGCCGAACGGTGGGCAAAGGACTCACGGCCAAGGCTGCTGGGGA
ACTGGGCTTATCCGCCGGCACTGTGGTGAGCACCTCCCTAATCGATGCCC
ATGCTGGCGCCTTGGGAATGTTTGGATGCCGCTCAAAGGAGTCCAAGGGT
GCCGACGATGTCCAGGGTAAAATGGCTCTGATTGCCGGTACATCCACCTG
CCACATGAGCATCACCCGGAAGGCATGCTTCGCACAAGGTGTTTGGGGTC
CCTATCAGGATGCCATTATTCCCGGCTACTTCCTAAACGAGGGTGGTCAG
AGCATCGCAGGACATCTCCTAGATCACGTCCTCAAGTCGCATGATCCTAC
GCCCGAACTGAAATCCCAATTGGGAGAGGATAAGTTTATCTACCCAGCAT
CTTAATAAGTTGCTGCCGGAACTGGCACCAGCTCGAGGATTAAGCCAGGT
GGGCTGTCTCACCCAGGATGTCCATGTCTGGCCGGACTTGCATGGGAATC
GGTCGCCCATCGCAGATCCCACGCTGCGAGGAGTGATTACTGGACTGGAC
ATGACGCGAGAACTGATCTCTGGCCATCAAATTCTTGGGGTTCGTTCAAG
CTCTGGCTTACGGCAACCGTTACATTATTGAAAACCTTTACAGTACGGTA
AACTTCCTTTAAACGCTCTTTTCTGCGGGGATGGCCAAAATCTCTGTACG
TACATGTCATGCGGACATTTGCCATCTCTGCCCGCCCTGGATTCCGGATA
AACAGGAATGGCTTAGGGGGCCCTCTGCCTTGGGAACCGC
FMO06786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 2123 | CG11594-RE | 711..1852 | 9..1140 | 4960 | 96.6 | Plus |
| CG11594-RD | 1879 | CG11594-RD | 467..1608 | 9..1140 | 4960 | 96.6 | Plus |
| CG11594-RC | 1944 | CG11594-RC | 532..1673 | 9..1140 | 4960 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4023690..4024565 | 885..9 | 4195 | 99.3 | Minus |
| 3L | 28110227 | 3L | 4023553..4023628 | 958..885 | 235 | 93.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:23 has no hits.
FMO06786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:39 Download gff for
FMO06786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 532..1653 | 9..1121 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:05 Download gff for
FMO06786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 530..1651 | 9..1121 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:06 Download gff for
FMO06786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 532..1653 | 9..1121 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:06 Download gff for
FMO06786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4023553..4023627 | 886..958 | 93 | <- | Minus |
| 3L | 4023690..4024565 | 9..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:39 Download gff for
FMO06786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4023553..4023627 | 886..958 | 93 | <- | Minus |
| arm_3L | 4023690..4024565 | 9..885 | 99 | | Minus |
