FMO06787.5prime Sequence
910 bp (858 high quality bases) assembled on 2008-10-01
> FMO06787.5prime
CAGTCGACATGCGAGATCGTCACTTGCCCAAAATGCCGCGTGGAGGAACG
ACAACATCGCGCTATGAGGAGGATCCAGATAATGCCTGGAATTGCTGCTC
CTGGTGCGAATACTTGCTGATCGTCATCCTGTCCACGATCCTGCTGGTGG
GCGTGCTGGTGCTAACCCTCTTCTGGGTGATGTTCTACCGCGATGGCTTC
GCCTGGTCGGAGAGTCCCAAGCAGCAGTTCAATCTGCATCCCATCCTCAT
GATTGCTGGCTTCGTCACGCTCTCCGGATTTTCCATCTTGATCTATCGTC
TGTGCCGCTGCGTGAAGCAAATCTATGTGAAGCTGATCCACATGTTCTTC
CACGCCGTGGCCATTCCGTGCATCGCCCTGGGTTTCATATCCGTCTTCGC
TTCCCACGACGCGTTGCATAAGGTCAACTTCTATAGCCTCCACTCGTGGC
TGGGCTTCGTGACAATGGGCATGTTCGTGCTCCAGTTTGTGATCGGCTTC
TTCAGCTTTCTGGTAATGCTGTGCTGTGAGAACAAGACCTACAGCTGCCG
CTCGGCCATGGTGCCCATCCACGCCAGCTTGGGACTGGCCAACTTCTGGC
TGGCCATTGCCACATCCGTCACGGGACTGATCGAGAAGGAGCGCGAAACC
GTCAACGAGGCGGGCGTGAGCAGTGAGAACAAGCTGGTGGAGCACTACAT
CACCAGTGCCATCGGCGTGACCCTGATCTTCATTGGCATCATCGTCACCT
TCGCGGGGCGGCGTTCCAATGCGCCCGCCTCGGCGAATGTCTACTTCACG
GACCCATTGCAAGCTTTCTAGACCATTCGTTGGCCCGCGGGCCCAGGTAA
GTGTCTAATCATAATCTAATTCTTAATCTTAACACACTAACCTAGAGATC
CTGGTCAGGA
FMO06787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-RB | 1804 | CG8776-RB | 254..1047 | 9..802 | 3910 | 99.5 | Plus |
| nemy-RG | 1849 | CG8776-RG | 299..1092 | 9..802 | 3910 | 99.5 | Plus |
| nemy-RE | 2224 | CG8776-RE | 766..1559 | 9..802 | 3910 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12660973..12661196 | 282..59 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 12660678..12660900 | 505..283 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12660457..12660630 | 670..497 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12660254..12660387 | 802..669 | 625 | 97.8 | Minus |
| 2R | 25286936 | 2R | 12664984..12665034 | 59..9 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:43 has no hits.
FMO06787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:22 Download gff for
FMO06787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RE | 757..1566 | 1..808 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:16 Download gff for
FMO06787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8776-RB | 243..1052 | 1..808 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:20 Download gff for
FMO06787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RE | 757..1566 | 1..808 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:20 Download gff for
FMO06787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12660457..12660621 | 506..670 | 100 | <- | Minus |
| 2R | 12660678..12660900 | 283..505 | 100 | <- | Minus |
| 2R | 12660973..12661196 | 59..282 | 100 | <- | Minus |
| 2R | 12664985..12665040 | 1..58 | 91 | | Minus |
| 2R | 12660254..12660385 | 671..802 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:22 Download gff for
FMO06787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8547759..8547890 | 671..802 | 97 | <- | Minus |
| arm_2R | 8547962..8548126 | 506..670 | 100 | <- | Minus |
| arm_2R | 8548183..8548405 | 283..505 | 100 | <- | Minus |
| arm_2R | 8548478..8548701 | 59..282 | 100 | <- | Minus |
| arm_2R | 8552490..8552545 | 1..58 | 91 | | Minus |
