FMO06789.5prime Sequence
964 bp (811 high quality bases) assembled on 2008-10-01
> FMO06789.5prime
CAGTCGACATGGCCTTCCGCTCGGTGGTTACGATGGAGAAGCCGCTCCAG
CACATTTCGCTGACGGACTGGTATGCCCGTGTGAACCAGATGCGGAATGT
GGCGGATGCCCGGAGGTCGGACGCCTTCGCCATCCGCCACTCATCCCGAT
CCTTGAGGAACGAGACGCGGATCGAGGGCGACTGGGCCAACTACGAGACA
AATGAGGCTCTGACCGATCGCATCTCCGAGTTGAATCGCTGGCGGGATAT
CATTTCCAAGTCCTTCGAGAAGATCGAGCGCGAGATATTCATGCTGCAGG
AGGAGAAGAATGCCACGGAACGGGAGCTGGAGGCGTTGGCAGGTCCGATT
TCCGTGATAGCCGAGTGCCTGACCATAAGGGACGGTCGCCTCGGATCGGA
GATCACCTACGATGAGGCCGACACCGAGATCAAGAACGAACTGGTCGTGC
TGGAGAACAACCAGCGCCTGCTGGCCGATCGATGCCAGAAGGCGTGGGAG
AAGCTCAATCGTCTGGAGGAAGTGCGCTTCAAGATCGGCCTGGAGATCGA
GTTCAAGGTGGAGGCGGTGCAGCTGGACAACTCACAGCTGGCGCTCGATC
GCAACTCGGCCAATATCTCATACAAGCCGGATCCCACGAGAAATCCCAAG
AACTCCTGTTCCTACGAGTCCTGGCTGGAGAACGTGAAGAACATAAAGCT
GCTGGCGGAGAATGAGCTGGCCGACACGTACGCCATTTCGGGAAGGCTTT
TGTTCGTGTGCCGCGAAAAGGCGCGCAACATGCTGCAGTCGCAGCAGGAG
CGGGCGGAGCACCCATCCCTCAACGGATCTTCGAGACCAGCGGGCCATAA
ACGAACTGGAGTGGCACCAGCTCAGATGAAAGGAAGAAATGGAGAAGGCA
TGTGCGAAATCCGCACCTCGGAGAATGCGCTGGGTGGAAAGAACGGATGA
CTGAAGCTGCCGAA
FMO06789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3085-RB | 1749 | CG3085-RB | 268..1218 | 9..959 | 4365 | 97.8 | Plus |
| CG3085-RA | 1670 | CG3085-RA | 189..1139 | 9..959 | 4365 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23075530..23075962 | 220..652 | 2165 | 100 | Plus |
| 2R | 25286936 | 2R | 23075255..23075466 | 9..220 | 1060 | 100 | Plus |
| 2R | 25286936 | 2R | 23076020..23076303 | 653..936 | 930 | 92.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:43 has no hits.
FMO06789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:09 Download gff for
FMO06789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3085-RA | 185..1144 | 1..964 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:13 Download gff for
FMO06789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3085-RA | 183..1141 | 1..962 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:56 Download gff for
FMO06789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3085-RA | 185..1144 | 1..964 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:56 Download gff for
FMO06789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23075251..23075466 | 1..220 | 98 | -> | Plus |
| 2R | 23075531..23075962 | 221..652 | 100 | -> | Plus |
| 2R | 23076020..23076331 | 653..964 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:09 Download gff for
FMO06789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18962774..18962989 | 1..220 | 98 | -> | Plus |
| arm_2R | 18963054..18963485 | 221..652 | 100 | -> | Plus |
| arm_2R | 18963543..18963854 | 653..964 | 92 | | Plus |
