FMO06791.5prime Sequence
1146 bp (922 high quality bases) assembled on 2008-10-01
> FMO06791.5prime
CGTTATCAGTCGACATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGGCC
CCAGTTGCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGCCA
GCTTGTCCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGCCAC
CCAAAATTCTGATCACAGGTGGCTTGGGCCAGTTGGGCATCGAGTGCGCC
AAACTCCTGCGGACGCAGTATGGCAGCCAAAACGTGATCCTCTCGGACAT
TATAAAGCCCAGTCAGTCGGTACTGGAGAATGGTCCCTACATTTTTGCCG
ACATCCTGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCATT
GACTGGCTGATCCATTTCTCGGCCCTGCTGAGTGCGGTGGGAGAGCAAAA
TGTTCCACTGGCTGTGAGGGTCAACATCGAGGGTGTCCACAACGTCATCG
AGCTGGCGAAGCAGTATAAGCTCCGCATCTTCGTACCAAGCACAATCGGA
GCCTTCGGTCCCGACAGTCCTCGCAATCCCACGCCGAATGTTACGATCCA
ACGGCCGCGCACCATTTACGGCGTTTCCAAGGTGCACGCCGAGCTGATTG
GCGAATACTACTACCACAAGTTTGGACTGGACTTCAGATGCCCTGCGCTT
CCCAGGAGTGATTTCCAGTGATCCGCCGGGCGGCGGCACCACAGATTACG
CTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCTAC
CTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGCG
GGCTCTCCTCGAGTTCATGCGTGCTCCCAACGAACAGCTGAAGCGCCGCG
TCTACAACGTGACGGCCATGTTCCTCATTTCCGAAGAGCTGTCGCCAGCT
GGGCAAGCAGTTGCCCAATCTGCACGTGACTACAAGCAAATAGCCCCAAT
TGATCGCAGACCCTGGCCGCAGTATTCAATGACTCCGATGCGCGGGCGAC
TGGCACTGGCAGCCAAGTACGACCTGTTCAACCTGGTGACTTCATGATCA
AGGACGTGCAGGAATACTAATTTAATGTTCACCCGGACCACCGACTCTGC
AGAATGCAAGCTTCTGAACTATCGTTGGCGCGCGACCCAGGTAATG
FMO06791.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5955-RA | 1314 | CG5955-RA | 69..1167 | 15..1103 | 4915 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20467716..20467969 | 166..419 | 1270 | 100 | Plus |
| 3L | 28110227 | 3L | 20467012..20467167 | 15..170 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 20469131..20469445 | 800..1103 | 745 | 89.8 | Plus |
| 3L | 28110227 | 3L | 20468312..20468460 | 545..694 | 700 | 99.3 | Plus |
| 3L | 28110227 | 3L | 20468125..20468253 | 417..545 | 645 | 100 | Plus |
| 3L | 28110227 | 3L | 20468964..20469072 | 693..801 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:38:16 has no hits.
FMO06791.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:09 Download gff for
FMO06791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5955-RA | 62..1150 | 6..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:09 Download gff for
FMO06791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5955-RA | 58..1146 | 6..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:24 Download gff for
FMO06791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5955-RA | 62..1150 | 6..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:24 Download gff for
FMO06791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20469132..20469428 | 801..1087 | 91 | | Plus |
| 3L | 20467005..20467165 | 6..168 | 97 | -> | Plus |
| 3L | 20467719..20467968 | 169..418 | 100 | -> | Plus |
| 3L | 20468127..20468253 | 419..545 | 100 | -> | Plus |
| 3L | 20468313..20468460 | 546..694 | 99 | -> | Plus |
| 3L | 20468966..20469071 | 695..800 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:09 Download gff for
FMO06791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20460105..20460265 | 6..168 | 97 | -> | Plus |
| arm_3L | 20460819..20461068 | 169..418 | 100 | -> | Plus |
| arm_3L | 20461227..20461353 | 419..545 | 100 | -> | Plus |
| arm_3L | 20461413..20461560 | 546..694 | 99 | -> | Plus |
| arm_3L | 20462066..20462171 | 695..800 | 100 | -> | Plus |
| arm_3L | 20462232..20462528 | 801..1087 | 91 | | Plus |
