FMO06792.5prime Sequence
755 bp (755 high quality bases) assembled on 2008-10-01
> FMO06792.5prime
CAGTCGACATGCTCTCCTACGAGCCCTCTTGCTCGATGGCGGTCCTGAAG
CACCACCCTCATCAGCACCAGCACCACGTGCCTCTGCCGCAGCGGTCAAA
CGAAAGCGCCTCGCACCACGCCCATGAATATGTGCCTGACTCCCAGCCCA
CCTCTCCGGCCCTACGTATGAGTTCTGAGGCGGTGGACTCGCCACTGGAC
CAGCAGGGCAACAACTCGGTGCCGGAACGCACGGATAGTTCCCACAAACT
GCGCCTGGGGCAGGCTTACTCGGAACGGACGCCGGAATCGATGACCCAGG
CCATTGACCCCATGGATATTATACCCAAGTCGGAGTCCGAATCGGAGGTG
GAACGTCTGCAGCGGGCCTCCAAATTCCTAGCGCGCCAGGAACAGCACCA
AGCCCAGCAGCAACAGCACCAGCAGCAGTTGCTGCCCGGTCAGCAGATCT
TCCCCAGCTACACGCATCCTTTGCCGTCGATGAATGCACCAAATACCTCC
CAACAGTCGCCTTACACACCGGGTCTGATGAGTCGCTTTACAAAACGCGG
CGTACGCATGTCCAAGGACCAAAAGGAGCTGTACGTTAAGTTTTTTCGAG
GACAATCCATGCATGCTATCAAACCACCGCCGGCACGATGGCCTCACTGA
ACCATTGTGGGCAAAATTGGCCCACATGCTGAATAGTGTTCCCCAAGGCG
CCGTATGAACGTATAGGACTGGAAGCAGACCTTTGACGCCTGGGCGGTAC
CGCAT
FMO06792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42676-RE | 1577 | CG42676-RE | 549..1294 | 9..755 | 3575 | 98.8 | Plus |
| CG42676-RC | 1411 | CG42676-RC | 383..1128 | 9..755 | 3575 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1803821..1804352 | 9..540 | 2630 | 99.6 | Plus |
| 3L | 28110227 | 3L | 1804417..1804627 | 544..755 | 870 | 97.2 | Plus |
Blast to na_te.dros performed 2014-11-28 22:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2849 | 378..446 | 174 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6856 | 383..428 | 158 | 82.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6819 | 383..445 | 153 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6785 | 383..432 | 151 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2383 | 385..462 | 149 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6823 | 383..428 | 149 | 80.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1565 | 366..428 | 146 | 73 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1149 | 388..427 | 137 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6865 | 383..457 | 134 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1586 | 383..428 | 131 | 76.1 | Plus |
| invader4 | 3105 | invader4 INVADER4 3105bp | 81..135 | 104..50 | 131 | 70.9 | Minus |
| invader4 | 3105 | invader4 INVADER4 3105bp | 2840..2894 | 104..50 | 131 | 70.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2380 | 383..427 | 126 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2431 | 383..462 | 123 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6795 | 391..462 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2446..2518 | 391..462 | 119 | 64.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8022 | 393..468 | 119 | 66.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9466 | 393..468 | 119 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1134 | 383..445 | 117 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2825 | 386..446 | 116 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2390..2470 | 383..462 | 114 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1117..1164 | 383..430 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2659 | 384..427 | 112 | 72.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7931..7986 | 372..427 | 109 | 66.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9375..9430 | 372..427 | 109 | 66.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 95..196 | 351..446 | 108 | 62.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9125..9226 | 351..446 | 108 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6763 | 404..446 | 107 | 72.1 | Plus |
FMO06792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:25 Download gff for
FMO06792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42676-RC | 376..1128 | 1..755 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:07 Download gff for
FMO06792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12022-RA | 519..1271 | 1..755 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:02 Download gff for
FMO06792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42676-RC | 376..1128 | 1..755 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:02 Download gff for
FMO06792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1803814..1804355 | 1..543 | 98 | -> | Plus |
| 3L | 1804417..1804627 | 544..755 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:25 Download gff for
FMO06792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1804417..1804627 | 544..755 | 97 | | Plus |
| arm_3L | 1803814..1804355 | 1..543 | 98 | -> | Plus |
