FMO06794.5prime Sequence
1137 bp (971 high quality bases) assembled on 2008-10-01
> FMO06794.5prime
CAGTCGACATGCAAAACGACAAGTATCCAGCGCCAATAGGCTTTTATCCA
CCACAAGGACAGCCGGGATATCCACAACCAGCGTCACAGCCAGGATACCC
TCAGCCAGGGCAGCCGCAACACATCACACCGGCGGAGACATACGGACCAC
AACCACCGCCAATGCCACCGCGGGATCCACACACCAGAGTGGATCCACCA
GGAGGATGCTTTCAGCGCAACCAAAAGAACAAACCTCAATCCAATGCTGT
GGGCGCAGCTGGTCTCATCTTTATCTCTGGAGGTATGAACATAGCGTGGG
CGATTGGCTTCCAAGGACCAATCTATTACCAAACCACCAAGCACAATTAC
ATTGCCTGGTTCATAGGCGCCATTATTGGAGCTTTGGTTACGATGGCGCT
GACCAACAAGGTGGCCAAAAAATATATTCTGCAATTTTCTTCAGTGTTGG
TGACCGTCGGTGGATTGGTTATTGCCTGCACCCACAATAATGGAGCTGGA
ACCACGGCAGCTTGTTACCTAGATGGTATTGCCAATGGTCTGGTATTTGC
CCCATTTATGGCGTTGGTCGGAGAGATCTCGGTTCCCTATTTGAGGGGCA
AGGCCAGTGCCACCTTGGAGCAATTGTGCTTTGGAACCGGTATACTTCTT
CAGATCCTTTATGTGTCAAATTGGACATATTCTTCGTATATGACATACAA
TGATTTTACGTCCCGAGAATATGAAAGGAGTGCTGAGCACAATCTACGGC
GTTTGGGCCCTTATTATGGGCTCATTTTTTACCATCGAATCGCCGGTTCT
AATGCTGGCAATAACGAAGAACAGGCGGGCCATTGACCGCACTGCGTCGG
CTACAAAAGCCTTGCGGTGCCTACCCGAGGAAACTTACGAGCTTCTGGCG
GAGCACAACGCTACTTGGCCTAAAACAGAATATGTCAAGAGTGAAAGCAT
TTCCAAAGCCGCTGCCCACTTCAATGCGACTTGCATACCTGCGCGGCCTG
AATGCTATGACATCTCCAGCTTTGGATCTATCCCTTATGTCGTGCATCTA
GTCTCATGATTTAGAATGCCAACCTCCTGATCAAAGAATAGCCTTGCCGT
GTGGATCCTATCATCCTTTGCATGAATCCTTGGACCG
FMO06794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42825-RA | 1752 | CG42825-RA | 114..1173 | 8..1063 | 4775 | 97.7 | Plus |
| CG32054-RA | 1775 | CG32054-RA | 365..775 | 225..635 | 245 | 71.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10096358..10096969 | 1043..431 | 2345 | 96.1 | Minus |
| 3L | 28110227 | 3L | 10097752..10098002 | 258..8 | 1255 | 100 | Minus |
| 3L | 28110227 | 3L | 10097030..10097205 | 431..256 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:33 has no hits.
FMO06794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:03 Download gff for
FMO06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42825-RA | 106..1156 | 1..1049 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:19 Download gff for
FMO06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6640-RA | 1186..2236 | 1..1049 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:42 Download gff for
FMO06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42825-RA | 106..1156 | 1..1049 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:42 Download gff for
FMO06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10097030..10097202 | 259..431 | 100 | <- | Minus |
| 3L | 10097752..10098009 | 1..258 | 98 | | Minus |
| 3L | 10096350..10096968 | 432..1049 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:03 Download gff for
FMO06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10089450..10090068 | 432..1049 | 96 | <- | Minus |
| arm_3L | 10090130..10090302 | 259..431 | 100 | <- | Minus |
| arm_3L | 10090852..10091109 | 1..258 | 98 | | Minus |
