FMO06795.5prime Sequence
1019 bp (-72 high quality bases) assembled on 2008-10-01
> FMO06795.5prime
ATTATACCAAGTTATCAGTCGACATGCAGGCGGTGCTCCAATCTGCGCAC
AGCAGCAGGCGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTAT
TCAGCCACGGTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGT
CGCCGTGCGAAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCC
GAGTACCAGCTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACT
TCGGGAAAGACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACC
CCGATTATCTGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAA
GGCCTCCTTAACGCTCCGAAGAGAATCTTGGCCACTCTGGCTAAAAACGG
GCAACTGCCCACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCG
GAGAACCGAGTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGC
GGATTGATGACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTT
CCAGCTGCCTATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTC
TGCAGAGTGCTCCCTCCACCCACCGAGATCCAAAAGCGCAATGTGGCCGC
CGTCGCACGCTACACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGA
GAAACGTAACCTGGGGAGCTCTGAGTCCTCGCCGGTCCACGGGAGTGCAG
CAGAACCGCGAGGATGAAGAGATGCTGTTGCTCGCGGCGCCCCCGACTAC
GCCGATCCCAATGCAGAGCTACTGGTGGTACCCCAGCTTACGCTGGGTAC
GCCGTACCTCGACTGGAACGATTATGCCGGGAAGAGAAACCTATTCCTAT
GCCGGGGTACTTCCACAACACAAGCGACTGCGTCAACCACCGCAGCCGTT
TGGCAAGCTTTTCTATACCATTCGTTTGGGCGCCGCGGGCCCAGGTAAGT
GGTCATATTCTAATCATAA
FMO06795.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp1-RA | 2044 | CG3441-RA | 232..1158 | 24..952 | 4190 | 97.5 | Plus |
| Nplp1-RC | 2695 | CG3441-RC | 232..1094 | 24..888 | 4020 | 98.3 | Plus |
| Nplp1-RB | 2313 | CG3441-RB | 232..1094 | 24..888 | 4020 | 98.3 | Plus |
| Nplp1-RC | 2695 | CG3441-RC | 1372..1421 | 905..952 | 185 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25036845..25037519 | 212..888 | 2815 | 97.7 | Plus |
| 2R | 25286936 | 2R | 25036593..25036713 | 96..216 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 25032608..25032680 | 24..96 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:43 has no hits.
FMO06795.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:54 Download gff for
FMO06795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp1-RA | 224..1163 | 16..958 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:58 Download gff for
FMO06795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp1-RA | 221..1160 | 16..958 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:26 Download gff for
FMO06795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp1-RA | 224..1163 | 16..958 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:26 Download gff for
FMO06795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25036593..25036712 | 96..215 | 100 | -> | Plus |
| 2R | 25032600..25032679 | 16..95 | 96 | -> | Plus |
| 2R | 25036849..25037530 | 216..900 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:54 Download gff for
FMO06795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20920123..20920202 | 16..95 | 96 | -> | Plus |
| arm_2R | 20924116..20924235 | 96..215 | 100 | -> | Plus |
| arm_2R | 20924372..20925053 | 216..900 | 97 | -> | Plus |
