FMO06803.5prime Sequence
1168 bp (891 high quality bases) assembled on 2008-10-01
> FMO06803.5prime
CAGTCGACATGTCTTATTTCGCAGATCCCAACCAGCAGTACAACTATGGC
GGCGGTAATCCCCCGCAGGGAGGATATGGTGGATATCCACCTCAGGGCGG
CTATCCACCTCAAGGACCGCCGCAAGGCTACCCACCCTATGCACAAGGAG
GTGCTCAACCCTATCCACAGCCCTACGGACAGGGGCCTCCACCGGGAGGT
TATGCTCCCCAGCCGGGATTTATCCAACCACCACCATCTGCTGGCGGCTA
CGGAGCCTACGATGATCCGGAGAGCCAGCCCAAGAACTTCTCGTTTGACG
ACCAAAGCATCCGTCGCGGATTCATACGTAAGGTGTACCTGATTCTAATG
GGACAACTAATCGTCACTTTTGGAGCTGTTGCCCTGTTTGTATACCACGA
GGGCACTAAAACCTTTGCCAGGAATAACATGTGGCTCTTTTGGGTTGCCC
TCGGCGTAATGTTAGTAACCATGCTGTCTATGGCTTGCTGCGAAAGTGTG
CGCCGCCAAACACCGACGAACTTCATATTCTTGGGTCTGTTTACAGCAGC
TCAGTCGTTCTTAATGGGAGTTTCCGCAACCAAATATGCTCCGAAAGAGG
TTCTCATGGCGGTGGGCATAACAGCAGCGGTTTGCTTGGCCCTAACGATC
TTCGCCTTGCAGACAAAGTACGACTTTACTATGATGGGCGGTATTTTGAT
CGCCTGCATGGTGGTGTTCCTGATCTTCGGCATCGTGGCCATCTTTTGTA
AAGGGAAAGATCATAACACTGGTGTACCCCTCGATTGGAGCGCTGCTCTT
CTCCGGTTATCTCATCCTACGACACACATTAATGATGGGCCGGCGAGCAC
AAATACTCTATCAGTCCCGAGGAGTAATCTTTGCCGCACTAACCTCTACC
TGGACTTCATCAATATCTTCATGACTTTCTGGACTATAATCGGGCGCATC
GCGCGACGCAAGCTTTCTAGACCCATTCGTTTGGGCGGCGCGGGCCAGGT
AAGTGGGTCATAATAAAATCATATATTAACCTATATCAACTTGCCTAGGA
AGATCCTGGTTCGGACCATGTGCTTTGAATTCTCACCACATAAAAAAGCC
CCCGGGGGCACCGGACCGTTTCTGGACAAATTCAAGGGAATGTTCTGAAG
GCCTATACTGCATTTTAT
FMO06803.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-RI | 1592 | CG3798-RI | 77..1028 | 5..957 | 4470 | 98.4 | Plus |
| Nmda1-RF | 2118 | CG3798-RF | 603..1554 | 5..957 | 4470 | 98.4 | Plus |
| Nmda1-RH | 1634 | CG3798-RH | 137..1070 | 23..957 | 4395 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12878384..12878730 | 351..5 | 1720 | 99.7 | Minus |
| 2R | 25286936 | 2R | 12877658..12878016 | 957..598 | 1300 | 95 | Minus |
| 2R | 25286936 | 2R | 12878071..12878322 | 601..350 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:17 has no hits.
FMO06803.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:15 Download gff for
FMO06803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 599..1560 | 1..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:58 Download gff for
FMO06803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 624..1585 | 1..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:18 Download gff for
FMO06803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 599..1560 | 1..965 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:18 Download gff for
FMO06803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12878385..12878731 | 1..350 | 98 | | Minus |
| 2R | 12877652..12878014 | 600..965 | 95 | <- | Minus |
| 2R | 12878073..12878321 | 351..599 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:15 Download gff for
FMO06803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8765578..8765826 | 351..599 | 100 | <- | Minus |
| arm_2R | 8765157..8765519 | 600..965 | 95 | <- | Minus |
| arm_2R | 8765890..8766236 | 1..350 | 98 | | Minus |
