Clone FMO06804 Report

Search the DGRC for FMO06804

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:68
Well:4
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06804.5prime Sequence

881 bp (881 high quality bases) assembled on 2008-10-01

> FMO06804.5prime
CAGTCGACATGAAAAAGAAATATCGTTTGCGGCCAGTTAGATTTTCACCT
GAATCACCTGCAATCGAACGCAATTATCATACCGGCAAAATGGAAACCAC
AACACCTGTGCTCGACCTGTTGATGCCGCACAACTCAACTACTGTGGCGC
CTCCGAAAGCGCTCTATGCAAATCGAAATCGCCTGATTATTGGTGTTATT
ATCATGGTTCTGGGCGTTTTTGGCAATTCGCTGGCCCTTTTCATTTTGGC
GCGCAAGAAGCTCAACAAAAACAGCAAATACACGCTCATGCTGCGATGCC
TGGCGACCAACAATCTGGTGGCTCTACTGGGCATGCTGACCACGACGCTG
CTGAAAATGTATCTCTCAAAGGAAGTCCTGCAGTCGTTCATCCGAGTGGA
TTGCGTGGGACTCGTGGTTTGGCGATTTTTCGGGCTCAGTTCTGGATGCA
TTGCAGCAGTTATGGCGGCAGAAAGATGGATGGCCCTAGCCAGACCCTTT
ATCTACCACAAGCACATTACCTACGAGCTCATTCGCAAGAGCATCAACAG
CATTCTGATGATCGCCGTGGTGATCACGTTCCTGCCATTCGTTGGTTTTG
GTGCATACATCGATGAATCCAATCCGGACCAGCTTAAGTGTATACGATAT
CGCGATGCGCCGGGCGTGTGGAACAAGACGTATGCGGTGCTCTTTATGGT
CTTCGGTACCCTGCTGTGCATTGTAATCGTGGCCTGCACCTCTTCGTGGC
CCACACCTTTGCTCTGTGTGATCGAAGGAGTCGCACGGGCAAGCGGCATA
TGCACTACGACCTGATTTCCAGGGACAAAACAGTGCCATCAACATCGATC
CCGAAACAGCAGCGGCACCACCCTCTTACAG

FMO06804.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-RC 1822 CG7497-RC 211..1081 9..876 4175 99 Plus
CG7497-RB 1696 CG7497-RB 211..1081 9..876 4175 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17633659..17633945 9..295 1435 100 Plus
3L 28110227 3L 17636318..17636535 295..512 1090 100 Plus
3L 28110227 3L 17636691..17636888 511..708 990 100 Plus
3L 28110227 3L 17636945..17637119 705..876 570 94.9 Plus
Blast to na_te.dros performed 2014-11-28 20:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 2733..2792 401..340 125 69.4 Minus

FMO06804.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:07 Download gff for FMO06804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 211..1086 9..881 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:34 Download gff for FMO06804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-RA 211..1086 9..881 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:35 Download gff for FMO06804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 211..1086 9..881 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:35 Download gff for FMO06804.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17636319..17636535 296..512 100 -> Plus
3L 17636693..17636885 513..705 100 -> Plus
3L 17636946..17637124 706..881 93   Plus
3L 17633659..17633945 9..295 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:07 Download gff for FMO06804.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17629419..17629635 296..512 100 -> Plus
arm_3L 17626759..17627045 9..295 100 -> Plus
arm_3L 17629793..17629985 513..705 100 -> Plus
arm_3L 17630046..17630224 706..881 93   Plus