FMO06806.5prime Sequence
956 bp (916 high quality bases) assembled on 2008-10-01
> FMO06806.5prime
CAGTCGACATGGCCAAGGACGAGGAGGATGATCTGCTGCCCGACAAGGAT
GCGGCCAAGGGCTTCTATGCCAAATACGAGCCCAAGGAGATTCTGGGCAG
GGGCATCAGTTCGACCGTGAGGCGATGTATCGAAAAGGAGACGGGCAAGG
AGTTTGCCGCCAAGATCATCGACTTGGGCGCCACCACAGAGTCAGGCGAG
ACGAATCCATATCACATGCTGGAAGCAACCAGACAAGAAATCTCAATACT
GCGCCAGGTCATGGGGCATCCCTACATAATTGATCTGCAGGATGTGTTCG
AGTCAGATGCATTTGTTTTCCTCGTCTTCGAGCTGTGTCCCAAAGGTGAA
CTCTTCGACTATCTGACCTCTGTGGTGACGCTATCCGAGAAGAAGACGCG
CACCATTATGCGACAAATCTTTGAGGGCGTCGAGTACATACACGCGAAGA
GCATTGTCCATCGGGATCTTAAGCCCGAGAATATCTTGCTGGACGAGAAC
CACAACGTTAAGATCACGGATTTTGGCTTCGCCAAGCAGTTGCAAGAGGG
CGAGAAACTTACAAATCTGTGCGGAACGCCGGGTTATTTGGCTCCCGAAA
ACGCTCAAGTGCAACATGTTCGAGGGATCCCCCGGCTACTCGCAGGAAGT
CGACATATGGGCCCTGTGGCGTGATTATGTTTACGCTGCTCGTCGGTTGT
CCACCTTTTCTGGCACCGCAAGCAGATGGTCATGCTGCGGAATATCATGG
AGGGCAAGTACAGCTTCACCTCGCCGGAGTGGGCTGATATTTCAGAGGAT
CCCAAGGATCTGATACGCAAATGTCTAGTCGTTGATCCTTCGCAACGAAT
AACCGTCAAGGAAGTAATAAGACATCCATTCCTCAACCAATGCTGTTCGA
GCAAACATTGATGGCCTCAGCGCCAGCCTGGCGACCAGTCCCGACAAATG
AGTCGC
FMO06806.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PhKgamma-RH | 2522 | CG1830-RH | 512..1459 | 9..956 | 4485 | 98.6 | Plus |
| PhKgamma-RB | 2421 | CG1830-RB | 411..1358 | 9..956 | 4485 | 98.6 | Plus |
| PhKgamma-RF | 2232 | CG1830-RF | 306..1190 | 9..895 | 4295 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11697311..11697595 | 280..564 | 1425 | 100 | Plus |
| X | 23542271 | X | 11697063..11697244 | 98..279 | 910 | 100 | Plus |
| X | 23542271 | X | 11698304..11698435 | 663..795 | 615 | 99.2 | Plus |
| X | 23542271 | X | 11696449..11696541 | 9..101 | 465 | 100 | Plus |
| X | 23542271 | X | 11698493..11698594 | 789..890 | 450 | 96.1 | Plus |
| X | 23542271 | X | 11697661..11697751 | 565..656 | 410 | 98.9 | Plus |
Blast to na_te.dros performed 2014-11-28 21:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Helena | 1317 | Helena HEL 1317bp | 923..968 | 355..310 | 113 | 71.7 | Minus |
FMO06806.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:34 Download gff for
FMO06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RB | 404..1358 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:41 Download gff for
FMO06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RB | 410..1364 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:55 Download gff for
FMO06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RB | 404..1358 | 1..956 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:55 Download gff for
FMO06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11696442..11696540 | 1..100 | 96 | -> | Plus |
| X | 11697066..11697244 | 101..279 | 100 | -> | Plus |
| X | 11697311..11697595 | 280..564 | 100 | -> | Plus |
| X | 11697661..11697751 | 565..656 | 98 | -> | Plus |
| X | 11698299..11698435 | 657..795 | 98 | -> | Plus |
| X | 11698500..11698597 | 796..892 | 95 | -> | Plus |
| X | 11699323..11699388 | 893..956 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:34 Download gff for
FMO06806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11590475..11590573 | 1..100 | 96 | -> | Plus |
| arm_X | 11591099..11591277 | 101..279 | 100 | -> | Plus |
| arm_X | 11591344..11591628 | 280..564 | 100 | -> | Plus |
| arm_X | 11591694..11591784 | 565..656 | 98 | -> | Plus |
| arm_X | 11592332..11592468 | 657..795 | 98 | -> | Plus |
| arm_X | 11592533..11592630 | 796..892 | 95 | -> | Plus |
| arm_X | 11593356..11593421 | 893..956 | 91 | | Plus |
