FMO06810.5prime Sequence
1139 bp (935 high quality bases) assembled on 2008-10-01
> FMO06810.5prime
CAGTCGACATGGGAATCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGT
ATACTGCCGGAAATCGCAAAACCGGAGCGCAAGATCCAATTCAGGGAGAA
AGTGCTATGGACTGCGATCACCCTGTTCATCTTCCTGGTGTGCTGCCAGA
TCCCGCTTTTCGGTATCATGAGCTCAGACTCGGCGGATCCCTTCTACTGG
ATCCGTGTGATCCTGGCCTCCAACCGTGGTACGCTCATGGAGCTGGGTAT
CTCGCCCATCGTGACCTCTGGCCTCATTATGCAGCTGCTGGCCGGAGCAA
AGATCATTGAGGTCGGTGATACGCCCAAGGATCGTGCTCTGTTCAACGGT
GCTCAGAAGCTCTTCGGCATGGTGATCACCATTGGTCAGGCCATCGTCTA
TGTGATGACTGGCATGTACGGCGATCCGTCGGAGATCGGCGCCGGTGTCT
GCCTGCTGATCATCATCCAGCTGTTCGCCGCTGGTTTGATTGTGCTGCTG
CTGGACGAGCTCCTGCAGAAGGGCTATGGACTGGGATCGGGAATTTCCCT
GTTCATTGCCACCAACATTTGCGAGACGATTGTGTGGAAGGCATTCAGCC
CCACCACCGTGACGACGGGACGCGGTACCGAGTTCGAGGGCGCTGTGATT
GCCCTGTTCCATCTGATGGCCACCAGGAACGATAAGGTGCGCGCTCTGCG
CGAGGCCTTCTATCGCCAGAACCTGCCCAATCTGATGAACCTGCTGGCCA
CCGTGCTGGTGTTCGCCGTGGTCATATACTTCCAAGGCTTCCGCGTGGAC
CTACCCCATCAAGAGCGCCCGTTACCGCGGGCCAGTACAGCAGCTATCCC
ATCAAGCTGGTCTACACCTCCACATTCCCATCATCCTGCAGTCTGCGCTC
TGGTCCAACTTGTACGTCAACCTCCCAGATGCTGGGCTGTTAAGTTCAGG
GCCAATTTCTCATTAACTTTCGGGTGTGTGGGCTGATGTTGGAGGTGCGG
CTCGCTCCGCTCCTATTCCAATCGGTGATCTGTGGTTATTATTCTTTCGC
CCCCAGAAAGCGGTGGGCCAATCCTGACGGATCCCATTCACGCGTCGCCT
TCATGGTCTACTGGTTGGAATCTCGGTCGCCTTCTTCTC
FMO06810.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-RB | 2128 | CG9539-RB | 246..1372 | 9..1139 | 4830 | 96 | Plus |
| Sec61alpha-RA | 2019 | CG9539-RA | 137..1263 | 9..1139 | 4830 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6478054..6479064 | 1095..82 | 4140 | 96.1 | Minus |
| 2L | 23513712 | 2L | 6480034..6480101 | 83..16 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:36 has no hits.
FMO06810.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:11 Download gff for
FMO06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 129..1263 | 1..1139 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:50 Download gff for
FMO06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 152..1286 | 1..1139 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:38 Download gff for
FMO06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 129..1263 | 1..1139 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:38 Download gff for
FMO06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6478011..6479062 | 84..1139 | 95 | <- | Minus |
| 2L | 6480034..6480101 | 16..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:11 Download gff for
FMO06810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6478011..6479062 | 84..1139 | 95 | <- | Minus |
| arm_2L | 6480034..6480101 | 16..83 | 100 | | Minus |
