FMO06811.5prime Sequence
1035 bp (-89 high quality bases) assembled on 2008-10-01
> FMO06811.5prime
CAATCGACATGCAGTCCATTCTGTCTTCAGTGAGGGCACTGGCCCTGCGC
CAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCCGTGAGCGA
GGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAAAGTCAAGG
TGGAAGTGAACAATGTTGGATTCATCCCGCACAACCAGCGCAACAAGAAA
ATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGGAAACAGGT
GCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCCAGTGTACT
CGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATCCCAGCATG
TACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTCAACATGCA
GGCGGATAACATCACACGTTTTGTGGATAACTTCCAGCGCATGGCCATGA
TTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAGTTTTCACC
AAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCCTCGCTAGT
CGGCGGCGTGGAGCTCATTAAGGATATTAACAGCGGCGAGCTGCTGCTCT
CCGACTACCAGTACGTCATTGCCCATCCGAATATACTGGCCGAGCTGGTG
GCCCTGCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAGAGCGAGAC
GCTGGGCACCAATCTGGTCGATATGATCGTCAAATTCTCCAGCGGCATTA
GTTACAGTGCAGCCTAGGATGAGTACCACCAAACTTTGGCCTGATCACCG
CCAGTGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAGGAGAACATC
AAGTTCCTACTGCAAGGATATTAACACTATGAGGCCCAGCGCGAAGTGAA
CGTTTCATTAACGTGTTCTTGCTGAAGAGCCAGCCAAGCAGTGAGCATCC
TAAAATCGATCCCTTTGTCTACGTTCCAGAAGATGTGGGGACACAGCCTG
GCGAATGGTGAAATGTGGATGGGGCCATAAGCCAT
FMO06811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL1-RA | 1220 | CG7494-RA | 73..1087 | 9..1027 | 4500 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8302124..8302593 | 510..980 | 1865 | 94.9 | Plus |
| 3R | 32079331 | 3R | 8301757..8302066 | 200..509 | 1520 | 99.4 | Plus |
| 3R | 32079331 | 3R | 8301512..8301702 | 9..199 | 910 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:06 has no hits.
FMO06811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:47 Download gff for
FMO06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL1-RA | 66..1056 | 1..996 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:47 Download gff for
FMO06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL1-RA | 64..1054 | 1..996 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:39 Download gff for
FMO06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL1-RA | 66..1056 | 1..996 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:39 Download gff for
FMO06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8301505..8301702 | 1..199 | 96 | -> | Plus |
| 3R | 8301757..8302066 | 200..509 | 99 | -> | Plus |
| 3R | 8302124..8302596 | 510..984 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:47 Download gff for
FMO06811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4127227..4127424 | 1..199 | 96 | -> | Plus |
| arm_3R | 4127479..4127788 | 200..509 | 99 | -> | Plus |
| arm_3R | 4127846..4128318 | 510..984 | 95 | -> | Plus |
