FMO06812.5prime Sequence
1123 bp (971 high quality bases) assembled on 2008-10-01
> FMO06812.5prime
CAGTCGACATGGTTCATATTATTGAATTGGTCGGCCAGCCGAAGGTTGAG
TTTGCTCAACAAGTTACTGTAAGTTGCCATCATCCATTAATACCACCAGC
CATCAAATTAATGAACCGTGCTTTACAGCTGAAGCCAGCTGAAAATGAAA
GTCGCAGCGAGCATTTAGATCGCAAGCTGTTCGTTGGCATGCTCAGCAAA
CAACAGACCGAAGACGATGTTAGACAAATCTTCCATCCCTTCGGCACTAT
AGAGGAGTGCACCATACTTCGTGGGCCGGACGGTGCTAGCAAAGGCTGCG
CTTTCGTCAAATTTGGTTCGCAGCAGGAGGCCCAGTCAGCAATAACCAAC
CTACACGGAAGTCAAACTATGCCGGGCGCATCCTCCAGCCTGGTCGTCAA
ATACGCCGACACGGAGAAGGAGCGACAAATAAGGCGCATGCAGCAAATGG
CCGGTCACATGAACCTGCTGAATCCGTTCGTCTTTAATCAGTTCAGTCCG
TACGGCGCCTACGCCCAGCAACAGCAACAGGCCGCTCTGATGGCCGCCGC
TGCCACGGCACCCGGATCCGCAGCCGCCTACATGAACCCGATGGCGGCTC
TGGCAACGCAGATACCTCATGGCCTAAACGGCACCGGCCAGCCCCCCTCG
CTGCCGTCGCCGACCATGCCCAACTTCAACATGGGCGCCAACACGCCCCA
ACGGACAGCCCGGCGGAGCGGCCGCCGCTGCTGCTGCGGCGGCTGCCGCG
GACGGCGTCTTCACGAACGGCATTCCACAAACGGCATTCCCAGGACATCC
GCTGCACTTGACTATACCGCCACAAGGTTTTGCCAAACGGCGATGCTGCT
ACCCTGCAACATGCCTTCCCTGGTCTGCCACCGTTTCCAGGAGTTGCCCT
TTCCCGCCGTCTATGGACAGTTTCCACCAAGCTTTAACCACCTCCCCCTA
GCGGGCGTTGCACCCACTCACGATGAAGATTTTCTGATGTCCCAGGATGT
TCGATATCCGGATCCGAGGGATGCAATCTCTCATTCTACCATTTGCCCAG
GATTTGGCGACGCGAGTTATGCAAATGTCTGCCTTTGGCATGTGGATCAG
CTCAAGGCCTCATCCGATCGTGG
FMO06812.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bru-3-RA | 2587 | CG43744-RA | 761..1877 | 9..1122 | 5010 | 97.6 | Plus |
| bru-3-RO | 2665 | CG43744-RO | 935..1955 | 105..1122 | 4515 | 97.3 | Plus |
| bru-3-RN | 2929 | CG43744-RN | 1199..2219 | 105..1122 | 4515 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13541722..13542001 | 796..516 | 1355 | 99.6 | Minus |
| 3L | 28110227 | 3L | 13542075..13542219 | 518..374 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 13602341..13602477 | 295..159 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 13541489..13541587 | 896..797 | 450 | 99 | Minus |
| 3L | 28110227 | 3L | 13584191..13584273 | 375..293 | 415 | 100 | Minus |
| 3L | 28110227 | 3L | 13664413..13664478 | 74..9 | 315 | 98.5 | Minus |
| 3L | 28110227 | 3L | 13539049..13539122 | 1048..976 | 260 | 93.2 | Minus |
| 3L | 28110227 | 3L | 13638517..13638565 | 159..111 | 245 | 100 | Minus |
| 3L | 28110227 | 3L | 13651555..13651596 | 110..69 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 13540572..13540641 | 970..898 | 185 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:00 has no hits.
FMO06812.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:37 Download gff for
FMO06812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-3-RA | 753..1865 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:22 Download gff for
FMO06812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-3-RA | 753..1865 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:01 Download gff for
FMO06812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-3-RA | 753..1865 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:01 Download gff for
FMO06812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13541489..13541587 | 797..896 | 99 | <- | Minus |
| 3L | 13541722..13541998 | 519..796 | 99 | <- | Minus |
| 3L | 13542075..13542218 | 375..518 | 100 | <- | Minus |
| 3L | 13584192..13584271 | 295..374 | 100 | <- | Minus |
| 3L | 13602342..13602476 | 160..294 | 100 | <- | Minus |
| 3L | 13638517..13638565 | 111..159 | 100 | <- | Minus |
| 3L | 13651555..13651596 | 69..110 | 100 | <- | Minus |
| 3L | 13664419..13664486 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:37 Download gff for
FMO06812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13657519..13657586 | 1..68 | 94 | | Minus |
| arm_3L | 13534589..13534687 | 797..896 | 99 | <- | Minus |
| arm_3L | 13534822..13535098 | 519..796 | 99 | <- | Minus |
| arm_3L | 13535175..13535318 | 375..518 | 100 | <- | Minus |
| arm_3L | 13577292..13577371 | 295..374 | 100 | <- | Minus |
| arm_3L | 13595442..13595576 | 160..294 | 100 | <- | Minus |
| arm_3L | 13631617..13631665 | 111..159 | 100 | <- | Minus |
| arm_3L | 13644655..13644696 | 69..110 | 100 | <- | Minus |
