FMO06814.5prime Sequence
1048 bp (981 high quality bases) assembled on 2008-10-01
> FMO06814.5prime
CAGTCGACATGGCGGTCTTTGGCATGGTCTCGGCTGTGTCCGGCTTTATC
AAGATACGCTATCTGCTGGACAAGGCGGTCATCGACAACATGGTTTTCCG
CTGCCACTACAGGATCACGACGGCCATTCTGTTCACTTGTTGCATCATCG
TCACCGCAAACAATCTGATCGGCGATCCCATAAGTTGCATCAACGACGGC
GCCATTCCGATGCACGTAATCAACACCTTCTGCTGGATCACCTACACGTA
CACGATACCTGGCCAGCAGCATCGGCAAATCGGAACGGACGTGGCTGGTC
CGGGATTGGGCAATGAGTACGGCCAGGAGAAGCGCTATCACAGCTACTAT
CAATGGGTGCCATTCGTGCTATTCTTCCAGGGGCTCATGTTCTACGTGCC
CCACTGGGTTTGGAAGAACATGGAAGACGGCAAGATCCGCATGATCACCG
ATGGACTGCGCGGCATGGTCAGTGTGCCGGATGACTATCGGCGTGATCGC
CAGGACCGGATCCTCAAGTATTTCGTGAACAGTTTGAACACCCACAACGG
CTACTCGTTCGCATACTTTTTCTGCGAACTGCTTAACTTTATCAACGTGA
TTGTGAATATCTTTATGGTGGATAAGTTTCTGGGCGGTGCTTTCATGTCC
TACGGTACGGATGTGCTCAAGTTCTCCAACATGGATCAGGACAAAGCGCT
TCGATCCGATGATCGAGATCTTTTCCCCGGCTCACCAAGTGCACGTTCCA
CAAGTTCGGTCCCAGTGGATCGGTCCAGAAACACGACACTCTCTGTGTGC
TGGCACTGAATATCCTCAACGAGAAGATCTACATTCTTTCCTGTGGTTCT
GGTTTATCATCTTGGCCACCATCTCCGGCGTGGCTGTGCTCTATTCACTG
GTGGTTATCATGATGCCCAACCACTCGGGAGACCATCATCAACCGTTCTT
ATCGCTCGGCACACGGAAGGAAATCGCCGGACTGATAGGCGTTTGGAAAT
GGTGACTTCCTGATCTTGCCCTTCTGAGCCAGACCTCTCACAAAGAAT
FMO06814.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inx3-RC | 1652 | CG1448-RC | 139..1164 | 7..1033 | 4870 | 98.7 | Plus |
| Inx3-RB | 2136 | CG1448-RB | 92..1117 | 7..1033 | 4870 | 98.7 | Plus |
| Inx3-RA | 1605 | CG1448-RA | 92..1117 | 7..1033 | 4870 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28854955..28855416 | 834..371 | 2190 | 99.1 | Minus |
| 3R | 32079331 | 3R | 28855732..28855942 | 381..171 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 28857142..28857307 | 172..7 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 28854731..28854884 | 997..845 | 595 | 96.8 | Minus |
| X | 23542271 | X | 6974798..6974900 | 827..725 | 185 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:12 has no hits.
FMO06814.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:26 Download gff for
FMO06814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx3-RA | 87..1129 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:38 Download gff for
FMO06814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inx3-RA | 66..1108 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:32 Download gff for
FMO06814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx3-RA | 87..1129 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:32 Download gff for
FMO06814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28855733..28855941 | 172..380 | 100 | <- | Minus |
| 3R | 28857143..28857312 | 1..171 | 98 | | Minus |
| 3R | 28854730..28854883 | 846..998 | 96 | <- | Minus |
| 3R | 28854946..28855406 | 381..845 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:26 Download gff for
FMO06814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24680452..24680605 | 846..998 | 96 | <- | Minus |
| arm_3R | 24680668..24681128 | 381..845 | 99 | <- | Minus |
| arm_3R | 24681455..24681663 | 172..380 | 100 | <- | Minus |
| arm_3R | 24682865..24683034 | 1..171 | 98 | | Minus |
