FMO06816.5prime Sequence
1085 bp (976 high quality bases) assembled on 2008-10-01
> FMO06816.5prime
CAGTCGACATGTCGGAAGAAGCGGCTAGCACCTCGTCCTTTGGCTTCAAG
AAGCGGAACCTCAAGAAGGGAGCTGGAATTCGTCGCAAAAAGGAAACCAG
CAGTGATGAATCTGCAAAAAGCAGCGATGAAGAGACCAAAGGCAAAGCCA
GTGCTCTGGTGCGAGCCGAGAACCGCCGAAAGCGCACGAATCCCAACTTC
CAGAGCACCAAGACAATGAGCAAAGCAAAGAGACAGGCGGGAGGAGTTGG
TGATGATGGCTCATCCTCAGCCTCCGACGATGATAAACTGGGCATTGCGT
ACAAATCCAAACGCGAGGCGCTGCCCAGTGGACCCCAAGATCAGGGAGCT
ACATCGATTAACGAAATGGACACAGAATTGGATCGCGATGCGCAGGCAAT
TCATGCGCGAGCTCTGAAAATCAACGAAGAGCTGGAGGGCAAGGCGGACG
ATAAGATCTATCGCGGAATTAACAACTATGCGCAGTACTACAAGAAGCAG
GATACAGCGGCAGGGAATGCCAGCTCCGGAATGGTACGAAGTGGCCCAAT
TAGGGCTCCTGCCCATCTTAGGGCCACTGTCAGGTGGGATTATCAGCCGG
ATATATGCAAGGATTACAAGGAAACAGGATATTGCGGCTTTGGCGACAGC
TGTAAGTTTCTGCACGATCGCAGTGATTACAAAGCGGGCTGGCAATTGGA
AATGGATCACGAAAATCAGCGAACGGGTGATGTAGACTCCGATGGCGATG
ATACCAAGTATGAGATTCACTCCGATGAAGAAACACTGCCTTTCAAGTGC
CACATCTGCCGACAGAGTTTTGTCAATCCCGTGGGTAACAAAGTGCAAGC
ACTATTTTCTGTGAAAAGTGCGCCTTGGCCCAGTACAAAAAGTCACAGCG
CTGCATTCATCTGTTCCCAGCAAACAATGGTATTTCATCCCGCCAAGAAG
CTGAATAGCTCGCCTCCAGAAAACCCATGAAAACTCAAATATGGATGAGG
AGGAGGAATTTGGGAAAAGGAGGAATAAGCGGAAGCAGGGAGGAAGCTTC
AGGAAATTCCTTCGATGAATAGTGGATGCAGCTTC
FMO06816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdlc-RA | 1419 | CG4973-RA | 107..1175 | 9..1074 | 4850 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20058017..20058737 | 114..834 | 3605 | 100 | Plus |
| 3R | 32079331 | 3R | 20057854..20057959 | 9..114 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 20058812..20059013 | 843..1040 | 445 | 90.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:38 has no hits.
FMO06816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:27 Download gff for
FMO06816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4973-RA | 100..1177 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:31 Download gff for
FMO06816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4973-RA | 98..1175 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:20 Download gff for
FMO06816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mdlc-RA | 100..1177 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:20 Download gff for
FMO06816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20057847..20057959 | 1..114 | 96 | -> | Plus |
| 3R | 20058018..20058744 | 115..842 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:27 Download gff for
FMO06816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15883569..15883681 | 1..114 | 96 | -> | Plus |
| arm_3R | 15883740..15884466 | 115..842 | 99 | -> | Plus |
