FMO06818.5prime Sequence
889 bp (888 high quality bases) assembled on 2008-10-01
> FMO06818.5prime
CGTTATCAGTCGACATGGATACGGAGAAGTCTAGCAGCAGCTCCTTCGAG
GACCTGACCAACGCCGAGGACACCAAAGACATTCGCAAGGTGGCAGCGGA
GGAGGCAGCCTCCGGAGATGGCGCACCCCCGGCATCCGTTTCTGGAGACG
GACAGAAGGCGGAGGAGGAGGATGCAGAGGAGGAATGTGATATACTGGGT
AACAAGCAGCTGATTAAGCGCACCATCAAAAAGGCACCGCAAGACTCGTT
TAGGCGTCCGATTCGCGGCGAATTGGTCACCGTGAACTTCACTGGAAAAC
TGGACAACGGCACGGTGGTCGAGAACGAGTTGAACTTCCAGTGTCACGTG
GGAGACTACGAGGTTATCCAAGGATTAGATATGGTGTTGCCCATGCTGCA
GGTCGGCGAAGTGTCCCAAGTCAGCGTGGATTCCCGCTTCGGCTACGGCT
CCCTAGGACTGAAAAAAGAGGGTGAATCCGAGTACCTGGTACCACCCGAT
GCGCACCTTACCTACGAAATAGAGCTTCTGGATATCAAATACGAAGAATT
TGCGGACCTTAAGAGCTTTGAAATACTGCGCAAATATGGTACGCGCAAAG
AAAGAACGTGCCAATTTCTTTTACAAACGCTCGGAGTTCACAACCGCCAT
TCACCTGTACAGACGTGCCCTCGACTTTCTGGACAATCGTGATGGGGATC
CGGACTCCGAGTTCGACAAGGGAAGACTTGCAGCTCTCGAACAGTGACAC
GCAGACCCTGCTAGAGGATCGGTTGATCGTTTTACAATAACTTGGCAATG
ACTCAAATCAAGATTGCCGCTTATGACGCAGCTCTGCAGTCCGTGGAGCA
TGTGCTGCGGTGCCAGCCAATAACCTCCAAAGCCTTGTA
FMO06818.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-RD | 1780 | CG5482-RD | 303..1174 | 15..889 | 4240 | 99.3 | Plus |
| CG5482-RC | 1958 | CG5482-RC | 160..1031 | 15..889 | 4240 | 99.3 | Plus |
| CG5482-RB | 1642 | CG5482-RB | 165..1036 | 15..889 | 4240 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18631133..18631624 | 506..15 | 2460 | 100 | Minus |
| 2R | 25286936 | 2R | 18630642..18630931 | 889..598 | 1300 | 97.9 | Minus |
| 2R | 25286936 | 2R | 18630996..18631078 | 589..507 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:06 has no hits.
FMO06818.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:21 Download gff for
FMO06818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 154..1030 | 9..888 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:26 Download gff for
FMO06818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 150..1026 | 9..888 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:28 Download gff for
FMO06818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RB | 159..1035 | 9..888 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:28 Download gff for
FMO06818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18630643..18630938 | 590..888 | 98 | <- | Minus |
| 2R | 18630996..18631078 | 507..589 | 100 | <- | Minus |
| 2R | 18631133..18631630 | 9..506 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:21 Download gff for
FMO06818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14518148..14518443 | 590..888 | 98 | <- | Minus |
| arm_2R | 14518501..14518583 | 507..589 | 100 | <- | Minus |
| arm_2R | 14518638..14519135 | 9..506 | 99 | | Minus |
