FMO06819.5prime Sequence
1136 bp (-79 high quality bases) assembled on 2008-10-01
> FMO06819.5prime
TTTATCAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCAAGC
CGGAGAGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCACAG
GCCGCCGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGTGAC
TAATGGGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACACCTG
CGACAGCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAGTTG
GCCACTCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAAGGC
CAACATGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCC
AGCTGTGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGCCAG
CACTTCGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTG
GCATCCGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACTCCA
TTCTGATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTT
ACCCACGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGCCCT
GAAGACGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTTCCCAAC
ATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTCTC
GCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGGTTGAGG
GAGAACTACAGGATCGCCATGATGCGCTGCACATCTACTTCGGACTCTTT
GGATTCGTTCTGCTATTTGCTAGTGCCCTGATGGGCATAACCGAGAAGGC
CATCTTCCCCATCAAACTCCGGCTTATTCCACTCTTTCACCGGCTGGTGT
GTTGGCCAATGTGATGGAAGTAATGTACGTGGTCTTCGGGGCGCTTGTTT
GTCTACCTAGCCCCTGATCCCTCCTAACAGCGGAAGCCCATTCCGAAGAC
ACGGCTCTGCTGACTCCGTTCTGTCAGAGGCAAGCTTTCATAACAATCGT
TTGCGCGCGGCCCAGGTAGGTGCCCAATCCTATCTATCCTATACTAACTC
AACTAAGCCTAGGAAGATTCCGGTCTAGACTGTGCT
FMO06819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1275-RA | 1574 | CG1275-RA | 198..1213 | 13..1026 | 4685 | 97.9 | Plus |
| CG1275-RB | 1698 | CG1275-RB | 322..1337 | 13..1026 | 4685 | 97.9 | Plus |
| CG1275-RC | 1300 | CG1275-RC | 207..948 | 287..1026 | 3315 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2253329..2253692 | 862..498 | 1605 | 97.8 | Minus |
| 3L | 28110227 | 3L | 2255538..2255813 | 288..13 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 2253777..2253989 | 497..285 | 1065 | 100 | Minus |
| 3L | 28110227 | 3L | 2253120..2253269 | 1013..864 | 505 | 92.1 | Minus |
Blast to na_te.dros performed 2014-11-28 22:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2949..2989 | 165..205 | 115 | 75.6 | Plus |
FMO06819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:07 Download gff for
FMO06819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RB | 317..1337 | 6..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:24 Download gff for
FMO06819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RA | 194..1214 | 6..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:39 Download gff for
FMO06819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RB | 317..1337 | 6..1026 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:39 Download gff for
FMO06819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2253105..2253271 | 863..1026 | 91 | <- | Minus |
| 3L | 2253329..2253692 | 498..862 | 98 | <- | Minus |
| 3L | 2253777..2253986 | 288..497 | 100 | <- | Minus |
| 3L | 2255539..2255818 | 6..287 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:07 Download gff for
FMO06819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2253105..2253271 | 863..1026 | 91 | <- | Minus |
| arm_3L | 2253777..2253986 | 288..497 | 100 | <- | Minus |
| arm_3L | 2253329..2253692 | 498..862 | 98 | <- | Minus |
| arm_3L | 2255539..2255818 | 6..287 | 98 | | Minus |
