FMO06821.5prime Sequence
964 bp (810 high quality bases) assembled on 2008-10-01
> FMO06821.5prime
CAGTCGACATGATGAGCAGCAGAACGCAGGACGCGGACGGTGCCTCGATC
AGATTCAGCGACCACACACTGGACAAGGCCACCAAGGCCAAGGTGACGTT
GGAGAACTACTACAGCAACCTGGTGACGCAGTATGGCGAGCGAAAGCAGC
GCCTCGCAAAGCTGGAGGCTCAGCTGAAGGACGAGAGCTTGTCGGAGGCG
CAGCGCCAGGAGAAGCGTCTGCAGCATGCCCAGAAGGAGACGGAGTATCT
CCGGCTGAAGCGATTGCGCCTCGGTGTGGAGGACTTTGAGGCCCTCAAAG
TCATCGGACGCGGCGCGTTCGGTGAAGTGCGTTTGGTGCAGAAAAAGGAC
ACGGGACATGTGTACGCCATGAAGGTGCTGCGCAAAGCGGACATGCTGGA
AAAGGAGCAGGTGGCACACGTACGAGCCGAGCGCGATGTCCTGGTCGAGG
CCGATCATCAGTGGGTGGTGAAGATGTACTACAGTTTCCAGGATCCCGTC
AATTTATATTTGATAATGGAGTTCTTGCCTGGTGGTGATATGATGACGCT
TTTGATGAAGAAGGACACGCTATCCGAGGAGGGCACACAGTTCTATATCA
GTGAGACGGCATTGGCGATCGATTCTATTCACAAACTCGGTTTCATACAC
AGGGATATCAAGCCCGATAACTTGCTGCTGGACGCGCGAGGGGCATCTGA
AGCTCTCCGACTTCGGACTGTGCACTGGCTTAAAGAAGTCGCATCGAACA
GACTTTTTATCGGGACTTGTCCAAGCGAAAACCATCCGATTTTATAGGCC
CGTTGCGCCCAGTCCGATTGGACTCCAAGCGACGTGCCGAGTCGGGAAAC
CAAATTCACGCGCCCTCGCCTTACAGCACCGTGGGGAACGCGGACTATAT
TGTAACCGAAGTTATTTCTGCAAACTGGCTACCGACCCGCCTGCGTACTG
GTGGGTCCCTGGGA
FMO06821.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trc-RA | 2277 | CG8637-RA | 213..1160 | 9..964 | 4295 | 97.5 | Plus |
| trc-RB | 2816 | CG8637-RB | 213..1172 | 9..964 | 4200 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19833609..19834092 | 492..9 | 2420 | 100 | Minus |
| 3L | 28110227 | 3L | 19832943..19833146 | 692..489 | 1020 | 100 | Minus |
| 3L | 28110227 | 3L | 19832777..19832878 | 803..701 | 375 | 93.2 | Minus |
| 3L | 28110227 | 3L | 19832582..19832707 | 945..819 | 310 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:00 has no hits.
FMO06821.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:43 Download gff for
FMO06821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 205..1159 | 1..963 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:19 Download gff for
FMO06821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 201..1155 | 1..963 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:36 Download gff for
FMO06821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 205..1159 | 1..963 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:36 Download gff for
FMO06821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19832770..19832876 | 703..812 | 93 | <- | Minus |
| 3L | 19832934..19833143 | 492..702 | 99 | <- | Minus |
| 3L | 19833610..19834100 | 1..491 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:43 Download gff for
FMO06821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19825870..19825976 | 703..812 | 93 | <- | Minus |
| arm_3L | 19826034..19826243 | 492..702 | 99 | <- | Minus |
| arm_3L | 19826710..19827200 | 1..491 | 99 | | Minus |
