FMO06822.5prime Sequence
1157 bp (970 high quality bases) assembled on 2008-10-01
> FMO06822.5prime
CAGTCGACATGCCACCCACGATCAACAATTCGGCGGTAAACAGTGCCGCC
GAAAAGCGACCCCAGCGGCAAACGGAGCGCAAATCCGAGATCATTTGCCG
CGTGAAGTATGGAAACAACCTGCCGGATATACCATTTGATCTGAAGTTTC
TGCAGTACCCCTTCGACAGCCACCGCTTCGTGCAGTACAACCCAACGTCG
CTAGAGCGTAACTTCAAGTATGACGTGCTGACGGAACACGATTTGGGTGT
CACGGTGGACCTGATTAACCGGGAGCTCTATCAGGCCGACTCCATGACGC
TGCTGGACCCCGCCGATGAAAAACTGCTGGAGGAGGAGACTCTGACGCCC
ACAGACTCTGTGCGTTCGCGCCAGCATTCGAGGACGGTGTCATGGTTGCG
CAAATCCGAGTACATCTCCACCGAGCAGACGCGCTTCCAGCCCCAGAACC
TGGAGAACATCGAGGCCAAGGTCGGTTACAACGTCAAGAAGTCGCTTCGG
GAGGAGACTCTCTACCTGGACCGCGAAGCCCAGATCAAAGCCATCGAGAA
GACCTTCAGCGACACCAAGAGCGAAATTACCAAGCACTATTCCAAGCCCA
ATGTGGTGCCAGTGGAGGTACTGCCTATCTTCCCCGACTTCACCAACTGG
AAGTTCCCGTGCGCCCAGGTCATATTTGACAGTGATCCCGCTCCTGCGGG
CAAGAACGTGCCCGCCCAGCTGGAGGAGATGTCGCAGCCATGATTCGTGG
TGTGATGGACGAGAGCGGCGAACAGTTTGTCGCCTACTTCCTGCCCACAG
AGCAGACGCTGGAGAACGCCGTACAGACTTCATCAATGGCGAGCTGTACA
AGGAGGAGGAGGAGTACGAGTACAGATCGCTCGAGAGTACAACTGGGACC
GTGAAGACCAAAGCTTCCAAGGGCTACGAAGAAACTACTTTCTTGTGATG
CGTCAGGACGGCATCTACTACACGAGCTAGAAACCCGTGTGTCGGCTAAC
AAGCGTCCGCGGTTAAGGTTGGCCAGCACCCAACACACCCAGCCTGGTTG
TCAGCATCGTCCATTGGACGACATGAACCATCGTATGCACGGCTATCCGA
GGCGCCCAGCTAAAATTCCTGGCCAGGGAGAGGAAATCCTGGTAAGAGTG
AGGGAAA
FMO06822.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-RB | 2040 | CG2503-RB | 373..1524 | 9..1156 | 5030 | 96.8 | Plus |
| atms-RA | 1769 | CG2503-RA | 102..1253 | 9..1156 | 5030 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4775834..4776785 | 79..1028 | 4230 | 97.9 | Plus |
| 3R | 32079331 | 3R | 4775706..4775779 | 9..82 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:57 has no hits.
FMO06822.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:40 Download gff for
FMO06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 94..1186 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:16 Download gff for
FMO06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 98..1190 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:34 Download gff for
FMO06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 94..1186 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:34 Download gff for
FMO06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4775698..4775779 | 1..82 | 95 | -> | Plus |
| 3R | 4775838..4776804 | 83..1046 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:40 Download gff for
FMO06822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 601420..601501 | 1..82 | 95 | -> | Plus |
| arm_3R | 601560..602526 | 83..1046 | 98 | -> | Plus |
