FMO06823.5prime Sequence
1131 bp (893 high quality bases) assembled on 2008-10-01
> FMO06823.5prime
ATTATACGAAGTTATCAGTCGACATGGAGATGGTTGAACCGGATGCGCAC
TTGGTGGCACTCAAAGTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCT
TGGACCTGTGGTAACCTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCA
GCTCCCAGGAGAGCGACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCG
GCCGGCCAGGTGCTACTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGG
CGAAACATTCGCCAGCTACATCTGCGTCCACAATACCACCCCGAATCCGG
TGGAATGCGTCACCGTCAAGGCGGATCTACAGTCGAACACGTCACGCATC
AACCTATCCATGCACGAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGG
TGGAACCATTGACGATGTGATACGATACGAGGTGAAGGAAATCGGAACAC
ACATTCTCGTCTGCGAAGTGAACTACTCGACTCCTGCGGGCTATGCTCAA
TCGCTGAGAAAGTTTTTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAA
AACCAAGTTCTACAATGCTGAAATCGACGAAAATCTACTTGGAGGCACAA
ATCCAAAACGTGACCACCAGTCCCTTCTGCCTGGAAAAGGTGGAGCTGGA
TGGCTCCGAGGACTACTCCGTCACACCACTGAACACGCTGCCAAATGGGG
AATCCGTATTCACGGTGAAACATATGCTGCAACCCAAAATAGTTGTCAGT
TCCTCTATTGCATCAAGCCCAAAGGAGATATTGCGAAGAATGTAGATACC
CTGCGGCAATTTAATAATGTGGGTAAACTGGACATCGTCTGGAGGTCGAT
TCTGGGCGAAGTATGGCAGACTGCAAACCCAGTCAGCTACAGCAGTTGCC
ATCGAAATGCAAACGCTTCGGCTGGAATACTGGATGCGAAAAAACACCAT
TAAATCGGCACGATATTCACGTTCAATTGTTCGCGTGCCGACCACATCCG
AGCATCCATGTAACTGAATGGTGCAATGGGCTGCCAAGGTTTTCCCCCAA
AAGTCAAAAACGGGCCTGTGCTGATTTTTTAGCCTGAATCTTCTACAAAG
GTGCAAACCGGCCCAAAATTTCCAATGTCCC
FMO06823.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4953-RA | 1746 | CG4953-RA | 106..1208 | 22..1130 | 4700 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10266911..10267300 | 65..454 | 1950 | 100 | Plus |
| 2L | 23513712 | 2L | 10267424..10267736 | 455..767 | 1455 | 99 | Plus |
| 2L | 23513712 | 2L | 10267797..10267922 | 766..893 | 495 | 96.1 | Plus |
| 2L | 23513712 | 2L | 10267996..10268182 | 911..1100 | 285 | 83.9 | Plus |
| 2L | 23513712 | 2L | 10266808..10266852 | 22..66 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:32 has no hits.
FMO06823.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:26 Download gff for
FMO06823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4953-RA | 106..1091 | 22..1008 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:14 Download gff for
FMO06823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4953-RA | 107..1092 | 22..1008 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:13 Download gff for
FMO06823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4953-RA | 106..1091 | 22..1008 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:13 Download gff for
FMO06823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10266808..10266852 | 22..66 | 100 | -> | Plus |
| 2L | 10266913..10267300 | 67..454 | 100 | -> | Plus |
| 2L | 10267424..10267736 | 455..767 | 99 | -> | Plus |
| 2L | 10267799..10267927 | 768..898 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:26 Download gff for
FMO06823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10266808..10266852 | 22..66 | 100 | -> | Plus |
| arm_2L | 10266913..10267300 | 67..454 | 100 | -> | Plus |
| arm_2L | 10267424..10267736 | 455..767 | 99 | -> | Plus |
| arm_2L | 10267799..10267927 | 768..898 | 94 | -> | Plus |
