FMO06827.5prime Sequence
1074 bp (1006 high quality bases) assembled on 2008-10-01
> FMO06827.5prime
CAGTCGACATGTTGGTCAAGTGCTGCATCGGATTTGGGTCACTCTGGCCA
CTGGCCATGATGGTGGCCTTTTGCACTGCCTACAAGAACGTTCGTCTCCA
GGACAACATGTGCTCGGACAAACTGTTCTACACGCTGGCCAAGCCGTTCC
GTGGCGATCCGACTGTGCGGCTGGAGTTCGAGGACACCTCCGGAGCGATC
GTGACGCAGATGTGGAATTTGACACTGCCCCACGGCCATACGGCCAACAA
GATTAAGTACGATTGCCAGTTTAGGGTGGTGACCAGCGAGCGACCGCGAC
GCGGCATTTACACTATCATTACGCGGCTTAAGTTTCGGCGCGACCCCGTT
TCCAAGGAGTGCATCGACTACATTCAGTTCAGCAGCGGCAATCGCTCGCC
CAGCGAACGCATTTGCACGGACATCTCCATTGATGGCCCGGCGGGACGTC
TGATCTTCGATCAGCGTGATCGCGACGTCAACGTGCACATATTTATCGAT
CGATCGCGTCATATACTAGGCGATCCCCTGGAGCTGCGCATGGTGCTAAC
GGCACACTCGGAGTGCCAGTTTAATGGAGACTTCCTTTGCGAGCCCAACG
ACCAGTACTCGTGCATTTCGCGTCATTTTGTGCGGGACAATATCACCAAT
TGCCTGTATCCGTGCCGCGACGAGGGCACCTGCTTTCACGACGCCATTGT
GCCGGAGATCGATACGGCCAATGTGGCTATATCGGCGCTGACCTCGCTCA
TCTTTACCATGGTGGGCGTGGGTTTTTGTGTGTGGATCTGCTGGAAGTAT
TGAACTGCATAACGGTGCAGCACGGGCGCACGAAGCCTCCGCTGCCCGCT
TCAATCAGCGTCGAGTCAGATCGGATGTGCCCACATTGAGCTGCCACCAT
CGGTGCACTACGATGATAGCGTCCTGCACGAGCACGATACCAAGCAGCAA
CAGCACCCGCCACGCCAAAGGATTCTACCGCCAGCTATGAGTCCTGTTCC
GGAAGGAGCAAGCTTTCTAGAACATCCGTTGTCGCCGGGGCCAGGTAGTG
GTCATATTCTATACTAATCTAATC
FMO06827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18870-RB | 2937 | CG18870-RB | 177..1177 | 5..1000 | 4820 | 99.2 | Plus |
| CG18870-RA | 2019 | CG18870-RA | 177..1177 | 5..1000 | 4820 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21615805..21616587 | 870..90 | 3815 | 99.7 | Minus |
| 2R | 25286936 | 2R | 21616646..21616731 | 90..5 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 21615612..21615737 | 994..871 | 425 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:54 has no hits.
FMO06827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:38 Download gff for
FMO06827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 170..1190 | 1..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:05 Download gff for
FMO06827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 130..1150 | 1..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:32 Download gff for
FMO06827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 170..1190 | 1..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:32 Download gff for
FMO06827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21615592..21615737 | 871..1012 | 93 | <- | Minus |
| 2R | 21615805..21616586 | 91..870 | 99 | <- | Minus |
| 2R | 21616646..21616732 | 1..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:38 Download gff for
FMO06827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17503097..17503242 | 871..1012 | 93 | <- | Minus |
| arm_2R | 17503310..17504091 | 91..870 | 99 | <- | Minus |
| arm_2R | 17504151..17504237 | 1..90 | 96 | | Minus |
