FMO06829.5prime Sequence
1138 bp (990 high quality bases) assembled on 2008-10-01
> FMO06829.5prime
CAGTCGACATGTCGGATGTGGACTCGGATGGCGAGGAGCCAACCCGGAAA
ACGGGCACCAATGCACTGGATGAGTTCCGGGAGAACTGGCAGCGGGAGCT
GCAGGAACACACAACAAACACTGGATCCAGGAGCCATTCCGAGGCTGGAG
ATCGCCTCACGGCGGCCAATTCCAATCTCAGCGAGGCTGATCTACTGCAG
GCCAAGGCGGAGAGTCTCTATCGGACCGCTGTGCAGCTGGAGCAGCGTGG
CAAGGTCTACGACGCACTACCCTTCTACAGGAAGGCCACCCAAATCGTTC
CGGATATTGAGTTCAGGTTCTACGAGCAGCAGAAGCAAAAGCTCAGCAAC
GATGTCAGCAAGAAGTACCTCAATCTGGCTAACGATTTGGCCAAGCAATT
GGATCTAGGTCAGTCGGATGGGGAGGAGGTCGTGGACAACCTGTACGAAA
AGTTCCAGCATGATTTGCGTCAGAAAAACATTTACAATGGCAAGATGATA
GCATCCAGCCGTGATGCCAATGTCCTGACCACCGGTCTGCACTTTGCCGA
CCTGCCGCCCGAGATTGTGATGCGCATCCTGCGCTGGGTGGTTTCCGCCC
AACTGGACATGCGCTCGCTAGAGCAGTGCGCTGCTGTTTGCAAAGGTTTC
TATGTCTACGCGCGGGATGAGGAGCTCTGGAGGCTAGCTTGTGTCAAAGT
ATGGGGCCACAACGTTGGAACTCTAGAGGCCCAGGATTCGGATGTAAGCA
ACGTGTTCCACTCCTGGCGAGACATGTTCATCCGCCGAGACCGAGTTCTT
TTCAACGGCTGCTACATCAGCAAGACTACGTACCTGAGAATGGGCGAGAA
CAGCTTTCCAGGATCAGTCTACGGTCCTGTGCAACTGGTGGAGACTATCG
CTACTTTCGCTTTCTGCCCGATGGCAAGGTGCTGATAAGAACACTGCCGA
TGACCGGCGCAGGGTATCCAAACTGAGCACGTGAACAACGTACGGGCGGA
AATGCTTCGGGTCGCTATCGTCTCTTCAGGAACACAGTCACTCTGTTCTT
GCAAGTCCCAGCAGCGAGGCCGGCTTACGTGGCGGCAAAGGCAGGGAAAA
TCTCAGGCATGGATAAGGACTCCCTCCAGGTTCTGATC
FMO06829.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5961-RB | 1463 | CG5961-RB | 56..1155 | 8..1097 | 4975 | 97.5 | Plus |
| CG5961-RC | 1653 | CG5961-RC | 246..1345 | 8..1097 | 4975 | 97.5 | Plus |
| CG5961-RA | 1658 | CG5961-RA | 251..1350 | 8..1097 | 4975 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12459200..12459889 | 697..8 | 3450 | 100 | Minus |
| 3R | 32079331 | 3R | 12458758..12459138 | 1069..698 | 1250 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:45 has no hits.
FMO06829.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:01 Download gff for
FMO06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 251..1304 | 8..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:26:00 Download gff for
FMO06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 248..1301 | 8..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:41 Download gff for
FMO06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 251..1304 | 8..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:41 Download gff for
FMO06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12458775..12459138 | 698..1054 | 94 | <- | Minus |
| 3R | 12459200..12459889 | 8..697 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:01 Download gff for
FMO06829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8284497..8284860 | 698..1054 | 94 | <- | Minus |
| arm_3R | 8284922..8285611 | 8..697 | 100 | | Minus |
