FMO06835.5prime Sequence
1148 bp (1008 high quality bases) assembled on 2008-10-01
> FMO06835.5prime
CAGTCGACATGCAATTCACGCTCCGTCATGTTGTTTCGGCAGTAGCCAAG
ACTCCTCTGCGCACCAATGCCGCCATTCTGGGTGCCCTCAACGCCCGCTG
CTACTCCAGCACCCACGAGGCGGACATCGTGGTGATTGGCTCCGGACCCG
GTGGCTATGTCGCCGCCATCAAGGCCGCCCAGATGGGCATGAAGACGGTC
AGCGTGGAGAAGGAGGCAACTCTGGGCGGCACCTGCCTGAATGTTGGCTG
CATTCCCTCAAAGGCGCTGCTGAACAACTCCCACTACTACCACATGGCCC
ACTCCGGTGATCTGGAGAAACGTGGTATTAGCTGCGGCAGCGTTAGCCTG
GATCTGGAGAAGCTTATGGGTCAAAAGTCCAACGCCGTGAAGGCTTTGAC
CGGTGGCATTGCCATGCTTTTCAAGAAGAACAAGGTCACACAGCTGACGG
GCTTCGGCACCATCGTCAATCCCAACGAGGTGGAGGTTAAGAAATCCGAC
GGCTCCACGGAGACTGTCAAGACCAAGAACATCCTCATCGCCACCGGCTC
GGAGGTTACCCCCTTCCCTGGCATTGAAATCGACGAGGAAGTTATTGTGA
GCAGCACTGGCGCCCTGAAGCTGGCCAAGGTGCCCAAGCATCTGGTTGTC
ATCGGCGCCGGTGTCATTGGCCTGGAGCTGGGTTCGGTATGGTCGCGTCT
GGGCGCTGAGGTCACTGCCATTGAGTTCATGGATACGATCGGCGGCGTGG
GCATCGATAACGAAGTCTCCAAGACGTTCCAAAGGTGCTCACCAAGCAGG
GTCTTAAAGTTCAAGCTGGGCACCAAAGGTGACGGGCTGCCTCTCGCAGC
GGCGACAACGTCACCGTGTCCGTGGAGAACGCCAAGTCTGGCGAGAAAGA
GGAGATCCAGTGCGACGCCCTGCTGGTCAATGTTGGAACGTCGTCCTTAC
ACCGAAAGTTTGGGTCTGGAGGCCGTGGGCATTGTAAGGATGACCGCGGC
AGGATCCCCGTCAACGCCACTTTCCAGACTGTGGGTGCCCAATATTACGC
ATCCGCGACTGCCTCCACGGACTCATGTGGCCCACAAGGCTGAAGATGAG
CCTCTATACCCACTGAAGGCATCACCGCGGCCAGTGCACTCGACTCAA
FMO06835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7430-RB | 1903 | CG7430-RB | 161..1302 | 8..1145 | 5155 | 97.5 | Plus |
| CG7430-RA | 2252 | CG7430-RA | 281..1422 | 8..1145 | 5155 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17847545..17848074 | 49..578 | 2650 | 100 | Plus |
| 3L | 28110227 | 3L | 17848138..17848659 | 579..1100 | 2015 | 96.6 | Plus |
| 3L | 28110227 | 3L | 17847196..17847238 | 8..50 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:37:32 has no hits.
FMO06835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:38 Download gff for
FMO06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7430-RA | 277..1385 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:47 Download gff for
FMO06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7430-RA | 277..1385 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:00 Download gff for
FMO06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7430-RA | 277..1385 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:00 Download gff for
FMO06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17847192..17847238 | 1..50 | 94 | -> | Plus |
| 3L | 17847547..17848074 | 51..578 | 100 | -> | Plus |
| 3L | 17848138..17848671 | 579..1110 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:38 Download gff for
FMO06835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17840292..17840338 | 1..50 | 94 | -> | Plus |
| arm_3L | 17840647..17841174 | 51..578 | 100 | -> | Plus |
| arm_3L | 17841238..17841771 | 579..1110 | 95 | | Plus |
