FMO06836.5prime Sequence
1148 bp (1023 high quality bases) assembled on 2008-10-01
> FMO06836.5prime
CAGTCGACATGCGTGCTCTCCGGTTCTTTGCGGCTCTTGCCCTCCAACTC
ACGGCCTGTAGCAGCCAGTACAAATATGGGCCAGAGCAATCCTGGGACCT
CGACTCTATTTCCGAGTTGAAGAGCAAGGAGTTCTGGTTTCACGACGCCC
AGCGCACGCTCTACAATAAGCTATCCACTCCACCAAACCAATATCGTGCC
AAGAATGTCATATTTTTCCTGGGCGACGGTATGTCCGTTCCCACGGTAAC
CGCAGGCAGGATCTTCGATGGACAGCTGCGTGGAGTGGTGGGCGAACGGA
ATCGTCTGGAGTTCGAGAAATTCAACTATGTCGGTCTGTCCAAGACTTAT
TGCGTCAATAAGCAAGTGGCTGACTCCGCCTGCACAGCATCGGCCTATCT
GTCGGGGATCAAGGCGAACTATCTGACCATCGGAGTGACAGCCGATGTGG
AGTTGAACGACTGCAGGGGATCGCGCTTGCCGCAGAATAGGCTCTCCTCG
ATTGCCGCCTGGGCGCTTAAAGGTAGCAAATCCGCTGGATTGGTGACCAC
CACTCGGGTTACCCACGCCAGTCCGGCCGGAGTTTATGCGCACACTTCGA
ATCGCGATTTCGAGAGCGACTACGACGTGACCAAATTGGGTCAAAATCCA
GGAAACTGTCCGGATATCGCCCAGCAATTGATAGACGGAGATGTGGGCAA
GCGACTGCGTGTGGTCATGGGCGGTGGAACCATTAAATTCTTGCCCAATA
CCACGAACGATGTGTTCGGAAACAAGGGCCAGCGGTTGGATTAATAGGAA
CCTCATTGAGGAATGGCAACAAACAAAGCCGGGTAATGCTAGGGTGGTGT
TTAGTCGTACGGATCTCCTGAACAATGATGCGCAAACACTGACTTCCTGC
TGGGGCTCTTCATGCCTCTCACTTGGCGTACCACATGACGACAGCATAGA
CACACCCACGCTACCCGAGATGACGGCAGCGGCAATAATTGTGCTTTCCC
GAGATCCAAACGGGTTTTCCTTTTCGGGAGGCGGTCGATCGATCACGCCA
TCATGGAGAACCAGGCAGAGGCTGGATGAAACCGTTCAGTTTCGGAACGC
AGTGAAATGCACGACAACTCACATTCCTGGAACCCTAATGGGTGGAGT
FMO06836.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5656-RB | 1806 | CG5656-RB | 70..1196 | 9..1122 | 5130 | 97.9 | Plus |
| CG5656-RA | 1785 | CG5656-RA | 70..1196 | 9..1122 | 5130 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21443052..21443738 | 1026..343 | 3160 | 99 | Minus |
| 3L | 28110227 | 3L | 21443841..21444103 | 344..82 | 1315 | 100 | Minus |
| 3L | 28110227 | 3L | 21444675..21444750 | 84..9 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:12 has no hits.
FMO06836.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:19 Download gff for
FMO06836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 63..1213 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:45 Download gff for
FMO06836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 58..1208 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:03 Download gff for
FMO06836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 63..1213 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:03 Download gff for
FMO06836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21442929..21443736 | 345..1136 | 96 | <- | Minus |
| 3L | 21443841..21444100 | 85..344 | 100 | <- | Minus |
| 3L | 21444675..21444756 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:19 Download gff for
FMO06836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21436941..21437200 | 85..344 | 100 | <- | Minus |
| arm_3L | 21437775..21437856 | 1..84 | 95 | | Minus |
| arm_3L | 21436029..21436836 | 345..1136 | 96 | <- | Minus |
