FMO06837.5prime Sequence
1111 bp (1001 high quality bases) assembled on 2008-10-01
> FMO06837.5prime
CAGTCGACATGGGTCGCCTGTTCCAATACAATCGCTTTGGCGCCACGGAT
GGCATCAACAAAAACACCAGCAAAAAGGATACTCAGCAAAAGAACAAAAT
GCTACGCAATGCCATCAAATGTCCTGGCTACTCGGACATCTATGGTCAGT
ACAATAAGGACTCGTCCTTCGAGAAGTGCGATGAATGGAGCAACAAGCTG
CAATTCCCAGCCGCCGGAGAAATGGATAAACAGGAACCGATCCAGAGTCG
CACGCACAAGGTCTACGACAGCATGAAGAGTTTTCTGCAGCGCAAACTCT
TCGCGCAACCCTCGCATAAAGAGCAGATCTTAAACGAAGAACCCACAAGC
GACTATGATGAGGACCTTCTCGACTCCTCGTACCACGCCGACGCGGAAGA
AGAGGAGGAGGAACGCGATGCGGACTGCAGCTGCAGCTCCACCGGCAGTA
GCAGCACCAGCAGCAGCAGCCCAACCACGCCGAAACGATCACCCCAAAAG
TCCCTGCTGTCCCTCAACTGCTGGCAGAGCAGTCAGCCAAGCAGTGACTC
CAATCCCGAAGAGGAGCAGGATGAGGAGGCAGAAGAGGACTCCGACGCTG
GAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCAACACCATG
AGCAAACGCCGTCGAGCTGCACCTCTATTCACCAGATACATCAGCGCCAA
CCAGAACTCCGACGATGATGAGGACGAGGAGCCGGAGCTCCTGGCGTGTC
CCTGGTATCAGCCCAGGATCACGGGCCAAGGCAGCTTTGGAGCACCTGCA
GCAAGGCACACCTGGAAGCTTTCTTCTGCGACGCAGTACGCCGCGACATT
TTCGAACTGGTCCTGCGACTCGAGAGGAACAACAAGGTCAAGACCTATCC
CGTGCAGTCCACCCGGAACCAGATGTACCGTCTGGAGGGAGCCAGAAACA
GTTCATCAGGCCTGAAGCGCTGATCACCCACCACTCCGTGATGGCCGAAC
AACTGCCATTGGTTATTGGATATGCCCAGGGAGCGTCATGTGGTGAAGCC
CTCATCAGGGCCCTAATGCAGATGACACTCGAGCGGCTGGAGTCCTGGCA
GCTACTCCGGG
FMO06837.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10479-RA | 1673 | CG10479-RA | 271..1365 | 9..1107 | 5140 | 98.3 | Plus |
| CG10479-RB | 1676 | CG10479-RB | 271..1368 | 9..1107 | 5100 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5967853..5968595 | 1107..361 | 3215 | 97.2 | Minus |
| 3L | 28110227 | 3L | 5968813..5969075 | 363..101 | 1315 | 100 | Minus |
| 3L | 28110227 | 3L | 5975645..5975737 | 101..9 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:12 has no hits.
FMO06837.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:22 Download gff for
FMO06837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10479-RA | 266..1342 | 2..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:42 Download gff for
FMO06837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10479-RA | 264..1340 | 2..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:26 Download gff for
FMO06837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10479-RA | 266..1342 | 2..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:26 Download gff for
FMO06837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5967876..5968593 | 363..1084 | 97 | <- | Minus |
| 3L | 5968814..5969074 | 102..362 | 100 | <- | Minus |
| 3L | 5975645..5975742 | 2..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:22 Download gff for
FMO06837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5960976..5961693 | 363..1084 | 97 | <- | Minus |
| arm_3L | 5961914..5962174 | 102..362 | 100 | <- | Minus |
| arm_3L | 5968745..5968842 | 2..101 | 96 | | Minus |
