FMO06839.5prime Sequence
966 bp (918 high quality bases) assembled on 2008-10-01
> FMO06839.5prime
CAGTCGACATGCCCGCCGCCGATGAACTGCAGTCGCCGTCCAGCGAAATG
GTCCTGCTGACCCCCAGCTCCGGCAATCCTCCCTCCAGCATTGCCCAACC
AGCGGCTAATCCTGCCGAGAAAGCTCAGTGTCGCGAGGGATCCGCCGAGT
CAGACAGCAGCAGGGTTGTGATCAAGAAGCAGCTGGGCCTCCTCGAAGGA
GTGGCCATCATCCTGGGCATCATCTTCGGATCCGGTATCTTTGTTTCTCC
GAAAGGCGTCATCCGGGAGGTGGAGTCCGTGGGCGCTTCGCTGGTCATCT
GGGTTCTCTGCGGACTGCTGTCCATGATTGGTGCTCTTTGCTACGCGGAA
CTTGGTACTGCCATACCAAAATCTGGGGGGGATTACGCGTATATCTTCGA
GGCCTACGGATCACTGCCGGCTTTCCTGTATCTCTGGGATGCCATGATGA
TATTCGTACCAACGACCAATGCCATTATGGGCCTGACCTTTGCCTCCTAC
GTGCTGGAACCCTTCTTCGGCGGAGCCTGTGAGATTCCCAAAATAGCGTT
ACAGCTCCTGGCAGCCATCACCATCTGCTTCCTAACCTACCTGAATTCGT
ACTACATGAAGGTGACCACCAAGATGCAAAACGTCATCATGTTCACCAAG
ATCGCCGCCCCTGGTCTTGATCATCCTGGTAGGCCTGGTCTGGATGATGA
TGGGCAACGTGGAGAACTTCCCGAGACCCTTTGATAACACTGAGACTGAT
CCCGGCAAGATGTCGGTAGCCTTTTACTCCGGTATCTTTTCCTATGCCGG
ATGGAATTACTTGAACTTTATGACGGAGGAGCTCCGCGATCCATATCGCA
ACCTGGCGCGCGCCATTTAATCTCCCCACCCCGGGCCCCGGCATTATGTG
CTGGCCAATGTGGCTTATCGGGCCTGCTGTCCCCCTCGAAAATGATCGCA
CCCATGCCATCGCTGT
FMO06839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 2190 | CG6070-RB | 106..1068 | 8..966 | 4490 | 98.1 | Plus |
| gb-RA | 2635 | CG6070-RA | 551..1513 | 8..966 | 4490 | 98.1 | Plus |
| JhI-21-RC | 2149 | CG12317-RC | 871..970 | 769..868 | 200 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27111271..27111720 | 457..8 | 2250 | 100 | Minus |
| 3R | 32079331 | 3R | 27110135..27110647 | 966..458 | 2090 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:43 has no hits.
FMO06839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:38 Download gff for
FMO06839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 544..1513 | 1..966 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:37 Download gff for
FMO06839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 529..1498 | 1..966 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:06 Download gff for
FMO06839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 544..1513 | 1..966 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:06 Download gff for
FMO06839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27110135..27110647 | 458..966 | 96 | <- | Minus |
| 3R | 27111271..27111726 | 1..457 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:38 Download gff for
FMO06839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22935857..22936369 | 458..966 | 96 | <- | Minus |
| arm_3R | 22936993..22937448 | 1..457 | 99 | | Minus |
