FMO06840.5prime Sequence
416 bp (186 high quality bases) assembled on 2008-10-01
> FMO06840.5prime
TGCCCGGTCAGTCAAAGTACGTGGTGGTGCGAGGAGTGGAGGATGGCTGG
AAGGTCATCAACAAGATGCAGGTGCGTGGTGCTCCGGCCATCGCTATCGT
TGGCTGCCTCTCCCTGGCCGTGGAAATCAACCCGGAGGATTTTGAGAACA
AGAAATCACTGCGGCAGGAGATTGAGGGAAAGTTGAAATATTTGGTTTCC
GCCAGGCCTACGGCGGTCAACATGAAGATCGCAGCCGACGAGCTCATCAC
CCTGGCCAACGAACTTTACAAGGACGAGGCAATCGACGTGACCCAAATGA
AGCATAGATTTCTGGACGCGACCGAAGCTATGCTAAAAAAAGACATTGCC
GATAACCGTGCCATTGGAGCGAATGGAGCCCAGGCGATCCTACAGGGCGT
GGCGAAGGCAGGTAAA
FMO06840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11334-RC | 1380 | CG11334-RC | 157..572 | 1..416 | 2065 | 99.8 | Plus |
CG11334-RB | 1452 | CG11334-RB | 229..644 | 1..416 | 2065 | 99.8 | Plus |
CG11334-RA | 1516 | CG11334-RA | 293..708 | 1..416 | 2065 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31460921..31461158 | 307..70 | 1175 | 99.6 | Minus |
3R | 32079331 | 3R | 31460754..31460864 | 416..306 | 555 | 100 | Minus |
3R | 32079331 | 3R | 31461811..31461884 | 74..1 | 370 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3833..3877 | 255..211 | 117 | 73.3 | Minus |
FMO06840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:08 Download gff for
FMO06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RA | 293..705 | 1..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:31 Download gff for
FMO06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RA | 293..705 | 1..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:13 Download gff for
FMO06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11334-RA | 293..705 | 1..413 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:13 Download gff for
FMO06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31460757..31460862 | 308..413 | 100 | <- | Minus |
3R | 31460921..31461156 | 72..307 | 99 | <- | Minus |
3R | 31461814..31461884 | 1..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:08 Download gff for
FMO06840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27286479..27286584 | 308..413 | 100 | <- | Minus |
arm_3R | 27286643..27286878 | 72..307 | 99 | <- | Minus |
arm_3R | 27287536..27287606 | 1..71 | 100 | | Minus |