FMO06841.5prime Sequence
1141 bp (1017 high quality bases) assembled on 2008-10-01
> FMO06841.5prime
CAGTCGACATGTCCCAGAGTTTTGTGCCAGTGCCAGAGAACAGCGATTTT
CCGCTGGAAAATCTACCCTACGCTGTCTTCTCAACCGAAAACAATAAAGT
TCACCGTATTTGTGTGGCCATTGGAGAGCATGTCCTGGACCTGAAAGCTG
TCTCGCAGTTGTTTCCTTTCCAAGTTCAGAAAAGCCTGCAGGCCGAAACT
TTGAATGAGCTTATGGGATTGGACTTTGAAGCTTGGGATGTGGTAAGAAG
CCAGACTCAAAAGCTATTGACGAAGGGTTCAGAATTGGACCACAATGTGG
ACTTGAAGGCGGTTTCCATTGTGCCACAGTCTGAGATCAAGCTGCACCTG
CCTGCACAGATTGGTGACTATACAGACTTTTACTCATCCATCCACCATGC
CACCAATGTCGGCATTATGTTCCGTGGACCAGACAATGCTCTGATGCCCA
ACTGGCGCCATCTGCCGGTGGGCTATCATGGTCGTGCAAGTTCTGTGGTG
GTTTCCGGTACTCCCATCCGTCGTCCTCTTGGTCAAACGTTTCCCGATGG
AGCAGAGAAGCCCGTCTTTGGCGCCTGCAAGCTTCTGGATTTCGAACTAG
AAAATGGCTTTCTTTATCGGTGGTAAGGGAAATCAGCTGGGTGAACCCAT
ACGCGTGGATGAGGCCTGGAAGAACGTGTTCGGTTTCACGCTGATGAACG
ACTGGAGTGCCAGGGATATTCAGAAGTGGGAATATGTGCCACTGGGCCCC
TTCACCGCAAAGAATCTGGGAACCACCATCTCCCCTTGGGTAGTGCCCAC
AGCTGCCCTGAAGCCCTTCGTCTTGGACAACTTTCCTCAGGAACGGAGGT
GCTTCCCTATCTGCGCCAGAACATTCCCTTTAACTTTGATATCACCTCGA
GTTGTCTTTGAACCCGCCGATCAAACGAAGCGCTTATTCCAAAGTCGAAC
TCCAACACCTTTAATTGACTCCCTGCAGCAATCGCCTCATCACACAGTCA
CGGTTGTATCTGCGTCCTGTGATCTGATGACTCCGGAACGATCTTCGGTG
AGACTCAGACTCGTACGGATCACTTTAAAAGCTCTGCTGAAAGCACCAAA
CATGGGACTTCCCGGGTTTGACCAGAATCCTCAGACTTTGA
FMO06841.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Faa-RA | 1421 | CG14993-RA | 115..1232 | 9..1112 | 4995 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4072492..4073091 | 912..314 | 2840 | 99.3 | Minus |
| 3L | 28110227 | 3L | 4073152..4073369 | 313..96 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 4073754..4073840 | 95..9 | 435 | 100 | Minus |
| 3L | 28110227 | 3L | 4072244..4072421 | 1093..923 | 345 | 88.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:57:56 has no hits.
FMO06841.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:25 Download gff for
FMO06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faa-RA | 115..1226 | 9..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:28 Download gff for
FMO06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faa-RA | 110..1221 | 9..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:16 Download gff for
FMO06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faa-RA | 115..1226 | 9..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:16 Download gff for
FMO06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4072490..4073091 | 314..913 | 99 | <- | Minus |
| 3L | 4073152..4073369 | 96..313 | 100 | <- | Minus |
| 3L | 4073754..4073840 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:25 Download gff for
FMO06841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4072490..4073091 | 314..913 | 99 | <- | Minus |
| arm_3L | 4073152..4073369 | 96..313 | 100 | <- | Minus |
| arm_3L | 4073754..4073840 | 9..95 | 100 | | Minus |
