FMO06842.5prime Sequence
704 bp (704 high quality bases) assembled on 2008-10-01
> FMO06842.5prime
TTGCCCGATGCGCCGCGATTCCGGCCAACTGTTGGCCCCGCGATCGCCGG
CGACTGTTACACCTGTGCAGCAGCGCCAGCGATAAGAGGCCAACAGCTTT
CTGCAGCAGGAACTACGCAACGAAGCCCGAAGCAGCGGTTCCACCACAAA
TCAAGCGAAATGTGGCCGCCGAGATAACCAGCGTGGGTAAGGTCATCTAC
GAAACGGGCTGGGATGCCAACAAGCCCATTGAAAAGCCAAAGGTCCGGCC
CAGCAGCTCGTCGTCCACACAGCCGACGCCGTCTAAGAAACCCGAAGACG
AGAAGCGCAAGGAGCTGGACACTGTGAAATCGAAACGGGATCAGATGCGA
GACAATATGCAGGACTACATATTCACCCGGTACTTCAACTATGTGAAGAA
CTACGACAAAGTGCTCGAAAAGAACTTCCCCAAGGCCATGCAGTTGTACA
GGGTGTTCTTCGATGGCGTCAAGGACTTTTTTGGCGACATGAAACGTTTC
CTCAAGATTGCCCGCATTGCCAATGATTCGCCCTCAAGGCATAAGAGCTT
TGAATCGCCAGGAGCTGGAGCTGTACATGCAGATGCCAAGGGACATGATG
AAGGTGGCACCAGCTCTGATCGGCTGCTCCCCTGCCCATGGTGGGCTATG
CGTCTTTCCCCCTCGTCTTTTATTACCCCCGCTCCCTTTCTCACTGCCCA
TTTC
FMO06842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5989-RA | 1567 | CG5989-RA | 172..872 | 1..704 | 3400 | 99.3 | Plus |
| CG5989-RB | 1561 | CG5989-RB | 172..866 | 1..704 | 3300 | 98.4 | Plus |
| CG5989-RC | 1534 | CG5989-RC | 241..839 | 103..704 | 2890 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8603265..8603858 | 666..71 | 2835 | 99.2 | Minus |
| 3L | 28110227 | 3L | 8603906..8603978 | 73..1 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:49:59 has no hits.
FMO06842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:00 Download gff for
FMO06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5989-RA | 172..872 | 1..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:26 Download gff for
FMO06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5989-RA | 168..868 | 1..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:06 Download gff for
FMO06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5989-RA | 172..872 | 1..704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:06 Download gff for
FMO06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8603167..8603203 | 667..704 | 97 | <- | Minus |
| 3L | 8603265..8603855 | 74..666 | 99 | <- | Minus |
| 3L | 8603906..8603978 | 1..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:00 Download gff for
FMO06842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8596267..8596303 | 667..704 | 97 | <- | Minus |
| arm_3L | 8596365..8596955 | 74..666 | 99 | <- | Minus |
| arm_3L | 8597006..8597078 | 1..73 | 100 | | Minus |
