FMO06845.5prime Sequence
762 bp (761 high quality bases) assembled on 2008-10-01
> FMO06845.5prime
CAGTCGACATGCCCAGCGAGATTATAACCCTTCAATTGGGCCAATGTGGC
AATCAAATTGGTTTCGAGTTCTGGAAGAGATTGTGCCTGGAGCACGGCAT
CTCCCCGGATGGCGTCCTGGAAGACTTCGCCACCGATGGACAGGATCGCA
AGGATGTGTTCTTTTACCAGGCGGACGACAACCATTACATACCGCGGGCC
GTTCTCATAGACTTAGAGCCCAGAGTCATTAACAACATCATGACCTCTCC
GTACTCCAAGTTGTACAACCAGGAGAATGTGTTCCTCTCCAAGCACGGCG
GTGGAGCAGGAAACAACTGGGCGTCCGGCTTTAGCCAGGGTGAGAAGGTG
CAGGAGGAGGTGTTCGACATTCTGGACCGCGAGGCCGATGGCAGCGATTC
GCTGGAGGGATTCGTGCTCTGCCACTCGATAGCCGGCGGAACTGGGTCCG
GAATGGGCTCATATGTCCTGGAACGGCTGTCCGAACGCTTTCCCAAGAAG
CTCATACAGACGTACAGCGTTTTTCCCAATCAGGACGAGATCAGCGACGT
GGTTGTGCAGCCATATAACTCGATCCTTACCCTGAAGCGTTTGACCAAGT
GCGCGGACAGTGTGGTGGTGCTGGATAATACCGCACTGAACCGCATCGCC
ACCGAAAAGATTGCACATCCAAACGCCCACTTTTACGCAGATCAACAATC
TGGGTGTCCACCATCATGAGTCTGAGCACCACCACCCTGCGATATCCCTC
GTACATGAAAAA
FMO06845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub37C-RB | 1628 | CG17566-RB | 75..823 | 9..759 | 3705 | 99.7 | Plus |
| gammaTub37C-RA | 1521 | CG17566-RA | 75..823 | 9..759 | 3705 | 99.7 | Plus |
| gammaTub23C-RA | 1850 | CG3157-RA | 197..917 | 36..759 | 1325 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19184727..19185225 | 759..259 | 2405 | 99.6 | Minus |
| 2L | 23513712 | 2L | 19185332..19185534 | 260..58 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 2973432..2973925 | 264..759 | 835 | 78.8 | Plus |
| 2L | 23513712 | 2L | 2973166..2973350 | 58..242 | 400 | 81.1 | Plus |
| 2L | 23513712 | 2L | 19185604..19185652 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:06:50 has no hits.
FMO06845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:38 Download gff for
FMO06845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 67..821 | 1..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:17 Download gff for
FMO06845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 50..804 | 1..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:23 Download gff for
FMO06845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 67..821 | 1..757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:23 Download gff for
FMO06845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19185332..19185534 | 58..260 | 100 | <- | Minus |
| 2L | 19185604..19185658 | 1..57 | 92 | | Minus |
| 2L | 19184729..19185223 | 261..757 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:38 Download gff for
FMO06845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19184729..19185223 | 261..757 | 99 | <- | Minus |
| arm_2L | 19185332..19185534 | 58..260 | 100 | <- | Minus |
| arm_2L | 19185604..19185658 | 1..57 | 92 | | Minus |
