FMO06847.5prime Sequence
974 bp (974 high quality bases) assembled on 2008-10-01
> FMO06847.5prime
CAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGGCAGAGGTG
GCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCGAAGATCGA
GGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGCGCGGACCG
ACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGGACGTAGAG
GAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCAAAGGAAAG
AGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGAACTGGCTC
GTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTGGTGGCCCC
CGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAGCACAGTGT
CAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGAGATCAACA
CGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCGACTTCACC
AAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATGTTCAAGCG
GATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGTGGCCACGC
ACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGACTGGTTCGG
AATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACCGTCGCGTC
TCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAATGGGCGGCG
ATAATGGATCTTTGTCTGATGCAATGACGCGCTACGAGACCCAGCTGCTA
AGCTTTTCCCCGTACTTCACGGAAGACGAGCGATATGGCGTGGATGAGAA
TTGCGGGAAGCAGTGAGAAGGATCAGGAAAGGGGTGCTCTCGTTAGTACC
GACGTTCCGAACGACGGAAACTTTCCGAATGATTAACTTTCGATGCAAGC
TTTTCTAGACCATTCGTTTGGCGC
FMO06847.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1902-RC | 1782 | CG1902-RC | 161..1093 | 8..939 | 4535 | 99.4 | Plus |
| CG1902-RA | 1749 | CG1902-RA | 128..1060 | 8..939 | 4535 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9604244..9604611 | 307..674 | 1840 | 100 | Plus |
| 2R | 25286936 | 2R | 9603881..9604180 | 8..307 | 1500 | 100 | Plus |
| 2R | 25286936 | 2R | 9604669..9604935 | 674..939 | 1080 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:37 has no hits.
FMO06847.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:57 Download gff for
FMO06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1902-RA | 121..1064 | 1..944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:15 Download gff for
FMO06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1902-RC | 152..1095 | 1..944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:37 Download gff for
FMO06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1902-RA | 121..1064 | 1..944 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:37 Download gff for
FMO06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9603874..9604180 | 1..307 | 99 | -> | Plus |
| 2R | 9604245..9604611 | 308..674 | 100 | -> | Plus |
| 2R | 9604670..9604939 | 675..944 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:57 Download gff for
FMO06847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5491379..5491685 | 1..307 | 99 | -> | Plus |
| arm_2R | 5491750..5492116 | 308..674 | 100 | -> | Plus |
| arm_2R | 5492175..5492444 | 675..944 | 97 | | Plus |
