FMO06848.5prime Sequence
563 bp (563 high quality bases) assembled on 2008-10-01
> FMO06848.5prime
CAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACGACCAGGAG
GATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAACTGCGGCA
TTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTTATTAAAGC
AGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCGGCAAGGAA
CGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCGATGTCGCA
GCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGAGGTAAAGA
CTTGCCGTTGCACCAAATCGATATTTACTTCCCATAATATATACCAAATA
CCATATGCTATTGTACTCCATACGTATGTGTGTGTGTGTGTATCTGGGTT
GGAGCGCAAGCGGATCTTTCATGTGCCGTTTCCTTCCGCTGCCGCAAAGG
GCGACGCCATCGCCGACTGCGCTGCCAGCAGCAGCACTTACAGAGGCAGG
CAAAATAATAGCACAGAGTCCGCTTTAAATCAAACGTCTAATGTAGCAAG
CTTTCTAGACCAT
FMO06848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6340-RA | 1346 | CG6340-RA | 102..638 | 9..545 | 2685 | 100 | Plus |
| CG6340-RB | 1814 | CG6340-RB | 102..387 | 9..294 | 1430 | 100 | Plus |
| CG6340-RF | 2177 | CG6340-RF | 102..386 | 9..293 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15483198..15483672 | 71..545 | 2375 | 100 | Plus |
| X | 23542271 | X | 15482475..15482538 | 9..72 | 320 | 100 | Plus |
| X | 23542271 | X | 15482855..15482974 | 86..205 | 305 | 87 | Plus |
Blast to na_te.dros performed 2014-11-28 22:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 715..865 | 123..277 | 124 | 58.6 | Plus |
FMO06848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:55 Download gff for
FMO06848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RA | 96..638 | 1..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:12 Download gff for
FMO06848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RA | 93..635 | 1..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:15 Download gff for
FMO06848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RA | 96..638 | 1..545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:15 Download gff for
FMO06848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15482469..15482537 | 1..71 | 94 | -> | Plus |
| X | 15483199..15483672 | 72..545 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:55 Download gff for
FMO06848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15376502..15376570 | 1..71 | 94 | -> | Plus |
| arm_X | 15377232..15377705 | 72..545 | 100 | | Plus |
