FMO06849.5prime Sequence
665 bp (664 high quality bases) assembled on 2008-10-01
> FMO06849.5prime
ATCGCCGAAGCGTTCGCGCATCGATGTCAAGGGCAACTTTGCCAACGGAC
CGCTGCAAGCACGCCCACTGGTGGCCCTACTCGATGGACGCGACTGCTCC
ATCGAGATGCCCATCCTAAAGGATGTGGCCACGGTGGCCTTTTGCGATGC
ACAAAGCACCTCCGAAATACACGAGAAGGTCCTCAACGAGGCAGTGGGAG
CTCTGATGTGGCACACCATCATCTTGACAAAGGAGGATCTTGAGAAGTTC
AAAGCTTTACGCATTATCGTGCGCATCGGCAGCGGCACAGACAACATTGA
TGTAAAGGCGGCGGGCGAACTGGGCATCGCCGTGTGCAACGTTCCCGGCT
ACGGAGTCGAGGAGGTGGCGGACACGACGATGTGCCTCATCCTCAACCTC
TACCGGCGGACATACTGGCTAGCGAACATGGTGCGCGAGGGCAAGAAGTT
CACCGGACCCGAGCAAGTGCGGGAGGCTGCGCATGGCTGTGCACGCATCC
GCGGCGACACCTTGGGTCTGGTGGGACTGGGCCGCATTGGTAGCGCCGTG
GCCCTGCGGGCTAAGGCGTTCGGCTTCAACGTCATCTTCTACGATCCCTA
CCTGCCCGATGGCATCGACAAGTCGCTGGGCCTAACTCGCGTCTACACGC
TGCAGGACCTGCTTT
FMO06849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CtBP-RJ | 2612 | CG7583-RJ | 399..1060 | 4..665 | 3310 | 100 | Plus |
| CtBP-RI | 2382 | CG7583-RI | 399..1060 | 4..665 | 3310 | 100 | Plus |
| CtBP-RH | 2627 | CG7583-RH | 399..1060 | 4..665 | 3310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13019894..13020202 | 177..485 | 1545 | 100 | Plus |
| 3R | 32079331 | 3R | 13020849..13021034 | 480..665 | 915 | 99.5 | Plus |
| 3R | 32079331 | 3R | 13019640..13019816 | 4..180 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:57:53 has no hits.
FMO06849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:23 Download gff for
FMO06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CtBP-RH | 397..1060 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:10 Download gff for
FMO06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CtBP-RE | 380..1043 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:14 Download gff for
FMO06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CtBP-RH | 397..1060 | 1..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:14 Download gff for
FMO06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13019638..13019814 | 1..178 | 99 | -> | Plus |
| 3R | 13019896..13020201 | 179..484 | 100 | -> | Plus |
| 3R | 13020854..13021034 | 485..665 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:23 Download gff for
FMO06849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8845360..8845536 | 1..178 | 99 | -> | Plus |
| arm_3R | 8845618..8845923 | 179..484 | 100 | -> | Plus |
| arm_3R | 8846576..8846756 | 485..665 | 100 | | Plus |
