FMO06850.5prime Sequence
1105 bp (902 high quality bases) assembled on 2008-10-01
> FMO06850.5prime
CAGTCGACATGAGTCTACAGGACGAGAGTTTTCCGACGGACGAGCTGTTT
GACCAGCTGAACAATTTGAGTAGCAGTGGCGCCAGGAATACCTGGTTCGC
GGAGCACCATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCCATTTTTGG
AGATCTGCTACGCGGATCCAGACTTTGATGCGGATGGGGATGTGGCCAAC
AAGAGCGCCAAGACATGCGTAAGCGATCCCGTGGGTCGTGATCAGGAGGA
TGAGGACGACTATGATGAGGATGTCGATGGCGATGATCATAAACTGGGTT
GCGAGAAGGCTCCATTGGGCAGCGGGCGCTCCAGCAAGGCGGTCTCTTAC
CAGGACATCCATTCGGCCTACACGAAGCGCCGCTTCCAGCACGTGACCAG
CAAGGTGGGCCAGTACATAGCGGAGATCCAGGCGCAGGACCAAAAGAGAC
GCAATGTGAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGCCGGAGAGT
CTAACGCCCACATTGCAGCAGGTGTATGTCCATGATGGTGACTTCAAGGT
GGACAAAAACTGCCAGACTCACTCCAACTCCGATTCGAATTACAATTCCA
ATTCAAACAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCGAGAACGAG
AGCCTGCAGCAAAAGATCAACTCATTGAGAGTAGAAAGCGAAGCGTCTGC
AGGGCTTCAACGAGTATGTCCAGGAACGACTGGACAGAAAGACAGATGAT
TTTGTGAAGATGAAGTGCAATTTCGAGACCCTGCGCACCGGAGCTAAAGC
GAATGCCAGCAGAAGCTTAGGCGCCAGCAGGAAAACTCACAGCACCACTT
TCATGTACCACATTCGATCGGCGACAGTGCCAAAGCCACTCAACGGATTT
CTGATGGAAACCATACCCGCCTTCGGAACGTCCTGTCACACCCCATCCCC
TGGGCGACTTGACCTACAACAGCAGCAAAGGATCCTTCGAGTTGGCACTG
CTCGATTGGCGCCTTCTGCCGAGTGTCCCGAATTCCGTCCAGGTCCAACG
CCCCATCATTCCACATCTTGAACTTAGCACGTTTAGCACGAGCTGATGGC
ACCGT
FMO06850.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swa-RA | 2022 | CG3429-RA | 113..1214 | 9..1101 | 4805 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6364369..6365145 | 1051..279 | 3140 | 97.1 | Minus |
| X | 23542271 | X | 6365325..6365596 | 280..9 | 1360 | 100 | Minus |
| X | 23542271 | X | 6362284..6362662 | 871..489 | 1115 | 88.5 | Minus |
| X | 23542271 | X | 6362667..6362833 | 448..282 | 625 | 91.6 | Minus |
| X | 23542271 | X | 6363110..6363242 | 280..142 | 525 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:34 has no hits.
FMO06850.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:57 Download gff for
FMO06850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 108..1178 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:07 Download gff for
FMO06850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 109..1179 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:02 Download gff for
FMO06850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 108..1178 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:02 Download gff for
FMO06850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6364350..6365144 | 280..1069 | 96 | <- | Minus |
| X | 6365326..6365600 | 1..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:57 Download gff for
FMO06850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6258383..6259177 | 280..1069 | 96 | <- | Minus |
| arm_X | 6259359..6259633 | 1..279 | 98 | | Minus |
