FMO06852.5prime Sequence
1007 bp (988 high quality bases) assembled on 2008-10-01
> FMO06852.5prime
CAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCAGCAACAAG
AACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCACGCGGACAT
CATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAACGAGTCGA
CGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACGTCAGCGGT
GAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACCTACATCGC
CGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGACCTGCATAA
TCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCAGCAAAAAA
CTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCCGGCCAACT
GGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGTGCTGCTGA
AGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCTTCCCCGAC
CATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAGCTGGCCTA
CTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAAGACCAAGG
AGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCACCCTGATC
GTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTGCTGCTCAC
GCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCTGATCGGCG
TGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGAACAATGCC
GTCTTTTTCCTGATCCGCTTCGCTACGTCCGTGATCGGGTGTGCTCACGC
TGTACTACGGCATCGGGGGGTGTGCGATCCCTGCTGGCCTTGGGCGGCCT
GATCGCCCTTGCAGGGCTACCTGGTCTTCTCCTTCATCACGGAGCAGCTG
CCGCGCCAAGCGCGAAGCCCAGAAAGAAGCCCAGGCGGAAGGCCTAGCTG
GTGCTGC
FMO06852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TRAM-RE | 1656 | CG11642-RE | 183..1176 | 9..1007 | 4750 | 98.7 | Plus |
| TRAM-RD | 1623 | CG11642-RD | 150..1143 | 9..1007 | 4750 | 98.7 | Plus |
| TRAM-RC | 1896 | CG11642-RC | 423..1416 | 9..1007 | 4750 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 936349..937342 | 9..1007 | 4625 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:52 has no hits.
FMO06852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:52 Download gff for
FMO06852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TRAM-RC | 416..1394 | 1..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:02 Download gff for
FMO06852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TRAM-RC | 416..1394 | 1..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:01 Download gff for
FMO06852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TRAM-RC | 416..1394 | 1..984 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:01 Download gff for
FMO06852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 936342..937319 | 1..984 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:52 Download gff for
FMO06852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 830375..831352 | 1..984 | 98 | -> | Plus |
