FMO06853.5prime Sequence
1157 bp (954 high quality bases) assembled on 2008-10-01
> FMO06853.5prime
CAGTCGACATGTCGCTAACGGTGGAAATTGTTGCCACAAAGCCCTATGAG
GGTCAGAAGCCAGGAACCAGTGGATTGCGCAAAAAGGTTAAGGTTTTCAC
CCAGCCCAACTACACGGAGAACTTTGTCCAGGCCATCTTGGAGGCAAATG
GAGCTGCTCTGGCTGGTTCCACCCTTGTAGTTGGTGGAGATGGACGTTTC
TACTGCAAGGAGGCTGCCGAGCTAATTGTGCGGCTATCCGCTGCCAATGG
CGTCTCCAAGTTGCTGGTGGGTCAAAACGGCATCCTGTCCACCCCTGCCG
TATCCAGCCTGATCCGTCACAACAAGGCTTTGGGCGGCATTGTTTTGACT
GCATCCCACAATCCCGGTGGTCCAGAGAATGATTTCGGCATCAAGTTCAA
CTGCGAGAACGGAGGACCTGCCCCGGATGCGTTCACCAACCACATCTACA
AGATCACCACCGAGATCAAGGAGTACAAGCTGGTGCGCAACCTGCAGATC
GACATCTCAAAGGTTGGTGTAACCTCGTTCGACATCGCCGGAAAGCCCTT
TACCGTGGAGGTGATCGATTCGGTGGCCAACTATGTGCGCCACATGGAGG
AAATCTTCGACTTCGCCAAGCTGAAGGACTTCGTAAGTGGCAAAGCCACT
GGAAAGCCTCTGAAGATGCGCATCGATGCAATGAACGGAGTAACTGGCTC
ATATGTGCGCGAGATCTTCCTGAACCGGGTGGGTTCCCACCGAATCATCG
GTGGTCCACACCACTCCACTGCCCGACTTTGGTGGTCTGCATCCTGACCC
AATCTCACATACGCCAGGACCTGGTTGACACTGTCCCCCAGGGAGACTAT
GACATTGGAGCTGCCTTCGATGGAGATGGTGACCGCAACATGAACATTGG
CAGAAGGCGTTCTTCGTAACTCTCCAACGACTCGCTGGCGGTATTGCCCA
CTACCCTGGAGGCCCTACCGTAACTTCCAAAAGAATGGTGTTCAAGGATT
CCCCCCGCCAATATGCCAACTGCATTCCGCTGTGAATTGGTGGGCAAAAA
GTGGCAAGAAGTGTTGAGGTTCCCACTGAATGGAAGTACTTCCGTAACTC
CATGGACCGAAAGTGTGGTCGTGGCGAAGAGAGAACTCTCGAACTGGTTC
AATCCCA
FMO06853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1843 | CG5165-RA | 39..1142 | 6..1107 | 4940 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16126785..16127561 | 1107..333 | 2950 | 95.9 | Minus |
| 3L | 28110227 | 3L | 16128094..16128343 | 334..85 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 16128411..16128493 | 88..6 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:14 has no hits.
FMO06853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:32 Download gff for
FMO06853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 35..1142 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:25:00 Download gff for
FMO06853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 100..1207 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:59 Download gff for
FMO06853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 35..1142 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:59 Download gff for
FMO06853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16126785..16127560 | 334..1107 | 96 | <- | Minus |
| 3L | 16128095..16128341 | 87..333 | 100 | <- | Minus |
| 3L | 16128413..16128497 | 1..86 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:32 Download gff for
FMO06853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16119885..16120660 | 334..1107 | 96 | <- | Minus |
| arm_3L | 16121195..16121441 | 87..333 | 100 | <- | Minus |
| arm_3L | 16121513..16121597 | 1..86 | 98 | | Minus |
