FMO06854.5prime Sequence
1152 bp (998 high quality bases) assembled on 2008-10-01
> FMO06854.5prime
CAGTCGACATGTCAGCTTTGCTTCTTTTACGCACCTGTAGAAGTTCATCA
ATTGCTGGCATCTACAAATACACATACCAAGGAACAACTATTGCGAATCA
CACATGCAATCATCGTCTGTCGTCTACAGAAGCGGCGGCCGCGAGTGTCC
AACTGGCAAATGCCGGTGGATTGGTGGGATATTGGCAGACCTTGTCCAAC
AGCACGCCGGTGGCCTATATGCAGGATGTTCTCATTAAGATCCACGACTA
CAGTGGCCTGCCCTGGTGGGCGTCCATCGTGCTGTCCACTTTCCTTTTTC
GGAGCGTGGTCACCCTGCCTCTGACCATTTACCAGCACAAAATCACCGCC
AGAATTGAAAAGATAGCGCTGGAGATGCCGGCCATTGTGGAGGAACTGAA
AAAAGAGGCAGCCATGGCCAAGCACAAGTTCAAGTGGAGCGAAAAGCAGA
CTCAGATTGTTTATCGGCGTTCGATCAAGAAGCAGTGGCAGAACCTTATA
GTTCGGGATAACTGCCATCCCATGAAGACCATGATTGTGCTATGGGGTCA
GATTCCCCTGTGGATCTTTCAATCCGTGGCTCTGCGCAATTTAGTGTACA
TGCTGCCGGATCCCACGTCCATTCAAGCTCAAATCGTGACCACCGAAATG
ACCATTGGCGGATTTGGTTGGATACCAAACCTTACGGTGGTGGATAACTC
TTATATCCTGCCTGTAGCATTAGGTCTTATCAATTTGGGCCATCATTTGA
AGTGCAAGCCCATGTCTAGAACTCGTCCTTCTACACGCTTTGCAGAACAT
CGCCCAACAATGTTTTTCCGTGGGATGAGTGTTGTGATGGTTCCAGTAGC
CTGTACAGTGCCTTTCAGCTTTATGTGTATACTGGGTAGCTTCCAGCAGT
TTGGGCTTGCTCAAAATCTGCTCATCCTCTCGCCGGAAGTGCGACGATCT
GTGGGGAATTCCCAAAACACAACGGAACTCATGAGCCCGTACGATCTGCT
CTGGCTAAAAATACAGCAGAGGCTAAGACTTGCCGAGAGGGGTGGCTGAA
TAACCGGCAGCCAAGCAGGCTTTCTAGACATTTCGTTTGGCCGCCGTCCC
GGGTAGTGGCCATAAATCTATTCTATTCTAATCCTATCCACTTAGCCTAG
GA
FMO06854.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4942-RA | 1306 | CG4942-RA | 103..1154 | 9..1064 | 4835 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9073207..9073671 | 9..473 | 2325 | 100 | Plus |
| 3L | 28110227 | 3L | 9073728..9074290 | 473..1041 | 2220 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:57 has no hits.
FMO06854.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:14 Download gff for
FMO06854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 103..1154 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:57 Download gff for
FMO06854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 80..1131 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:14 Download gff for
FMO06854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 103..1154 | 9..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:14 Download gff for
FMO06854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9073207..9073671 | 9..473 | 100 | -> | Plus |
| 3L | 9073729..9074290 | 474..1041 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:14 Download gff for
FMO06854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9066307..9066771 | 9..473 | 100 | -> | Plus |
| arm_3L | 9066829..9067390 | 474..1041 | 97 | == | Plus |
