FMO06857.5prime Sequence
934 bp (889 high quality bases) assembled on 2008-10-01
> FMO06857.5prime
CAGTCGACATGCCCGGCTTTCACCTCACTGAGATGGGTGAAATGGTCCTG
GACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTGGCCTCCGA
CATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCACGGACGCCG
TCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGTTGGAGGCG
CTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAGCTGCGCGA
TAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGAGTTCCGGC
GGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGCGCAGCGAG
ACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAGAACAAGCG
GCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCAGAGCTCCG
GCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCAACCACGAG
CTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTGAAGGAGCA
GATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGAGCTGCAGG
ACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGCGTCTGAAG
GCATCAGAGCGAGATACCCGGCGCCGCCCACAAGCTGATGCAGGCCCAAA
TGAAGACGCTGTGCGAGGGAGCGCGCCGACTTTCTTGCCCACCTGCAGGA
CCAGAGCCGGGAGATCAACCCAACTGCGCAAGCGATTTGGGCCTGGCCGA
AAAGGGAGAAATGAGGATTTGGGTGGCCTCGTACGACGAATGGGCAGAAC
GATCCCACCGGGCCGCGGGTACACCCACGCGCGAGCTGAAGAGTTGAATT
ACGAAGGCGAGGAGCTGCTGAACCCACATCGACC
FMO06857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11448-RC | 3603 | CG11448-RC | 491..1405 | 9..933 | 4120 | 97.3 | Plus |
| CG11448-RB | 3799 | CG11448-RB | 491..1405 | 9..933 | 4120 | 97.3 | Plus |
| CG11448-RA | 3784 | CG11448-RA | 491..1405 | 9..933 | 4120 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1393544..1394158 | 9..623 | 3060 | 99.8 | Plus |
| X | 23542271 | X | 1394224..1394512 | 624..921 | 785 | 92 | Plus |
Blast to na_te.dros performed 2014-11-28 23:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1b | 5171 | Rt1b RT1B 5150bp | 3133..3169 | 318..353 | 110 | 81.1 | Plus |
FMO06857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:23 Download gff for
FMO06857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11448-RA | 491..1383 | 9..910 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:49 Download gff for
FMO06857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11448-RA | 480..1372 | 9..910 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:17 Download gff for
FMO06857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11448-RA | 491..1383 | 9..910 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:17 Download gff for
FMO06857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1393544..1394158 | 9..623 | 99 | -> | Plus |
| X | 1394224..1394501 | 624..910 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:23 Download gff for
FMO06857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1287577..1288191 | 9..623 | 99 | -> | Plus |
| arm_X | 1288257..1288534 | 624..910 | 93 | | Plus |
