Clone FMO06858 Report

Search the DGRC for FMO06858

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:68
Well:58
Vector:pMK33-CFH-BD
Associated Gene/TranscriptGalphas-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06858.5prime Sequence

1155 bp (804 high quality bases) assembled on 2008-10-01

> FMO06858.5prime
GAAGTTATCAGTCGACATGGGTTGCTTTGGGTCGCCCACCTCCAAGCAGT
CGGACGTGAACTCGGAGGACTCGAAGAGCCAGAAGCGCCGGAGCGATGCA
ATATCTAGACAGTTGCAGAAGGACAAACAGCTCTACAGGGCCACACACAG
GCTGCTCCTCCTGGGGGCGGGCGAGTCCGGCAAATCAACCATAGTCAAGC
AAATGCGAATATTGCATGTCGACGGATTTTCTGACTCGGAAAAGAAACAG
AAAATTGATGATATTAAAAAGAATATTCGAGACGCTATCTTGACTATTAC
AGGAGCCATGAGCACACTTAATCCACCTGTAGCTTTAGAAAAGAAGGAAA
ATGAACCCAGAGTGGAGTACATTCAGGATTATGCATCTAGTCCGGACTTT
AATTATCCTCCTGAATTTTATGAACATACAGAAGAACTATGGAAAGACAA
GGGCGTTCTTCAAACCTATGAGAGGTCGAATGAGTATCAATTAATCGATT
GTGCGAAATACTTCCTGGACCGAGTGAGCACAATCAAGAATCCAAACTAC
ACCCCTAATGAGCAGGATATTCTTCGGTGCCGTGTTTTGACTTCTGGAAT
ATTTGAAACAAGATTTCAAGTGGACAAAGTAAACTTTCACATGTTCGATG
TCGGTGGCCAGCGGGACGAGCGTAGGAAATGGATTCAGTGTTTCAATGAT
GTAACTGCTATCATATTCGTAACTGCGTGCTCAAGTTATAACATGGGTTT
TGCGGGAAGATCCCACCCGAAACCGACTTCGAGAATCTTTGGATTTGGTT
CAAGAGTATTGGAACAACAGATGGGCTTCGCACATTTCTATTATACTAAT
TTTTAAATAGCAAGAATTGGTTAGCAAAGAAAATAAGGCTGGAAAAAGTA
AATTGTCGGAATATTTCTCCGAGTTAAAAATACCAACGCCAATCGACACA
GGTGACGCATTATGGATTCCATGAATGACCGAAAGTTAACGAGCAATATT
TCCTACGAAACGAGTTTCGGCGTATATCTTCGCTTAGCGGAGAAGGAAAC
ACTACTGCTTATCCACATTTTCCATGCGCCGTTGAACAAAAAAATTAAAG
GTGGGGTTTAAAGGATTTGCCAAAACATATATTCCAGGGATCCACTCTTT
CTCAA

FMO06858.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-RD 1646 CG2835-RD 300..1395 17..1103 4650 96.2 Plus
Galphas-RB 1859 CG2835-RB 513..1608 17..1103 4650 96.2 Plus
Galphas-RE 1826 CG2835-RE 489..1575 17..1103 4505 95.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23944465..23944740 17..292 1380 100 Plus
2R 25286936 2R 23945898..23946077 640..820 730 97.3 Plus
2R 25286936 2R 23945696..23945824 511..639 645 100 Plus
2R 25286936 2R 23944960..23945080 390..510 605 100 Plus
2R 25286936 2R 23944806..23944905 292..391 500 100 Plus
2R 25286936 2R 23946139..23946241 824..925 280 91.3 Plus
Blast to na_te.dros performed on 2014-11-28 19:09:46 has no hits.

FMO06858.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:10 Download gff for FMO06858.5prime
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 511..1608 13..1103 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:47 Download gff for FMO06858.5prime
Subject Subject Range Query Range Percent Splice Strand
G-salpha60A-RB 508..1605 13..1103 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:29 Download gff for FMO06858.5prime
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 511..1608 13..1103 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:29 Download gff for FMO06858.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23946137..23946261 821..942 91 -> Plus
2R 23944463..23944740 13..292 99 -> Plus
2R 23944807..23944903 293..389 100 -> Plus
2R 23944960..23945080 390..510 100 -> Plus
2R 23945696..23945824 511..639 100 -> Plus
2R 23945898..23946077 640..820 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:10 Download gff for FMO06858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19833421..19833600 640..820 97 -> Plus
arm_2R 19831986..19832263 13..292 99 -> Plus
arm_2R 19832330..19832426 293..389 100 -> Plus
arm_2R 19832483..19832603 390..510 100 -> Plus
arm_2R 19833219..19833347 511..639 100 -> Plus
arm_2R 19833660..19833784 821..942 91 -> Plus